View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_15 (Length: 339)
Name: NF6289_low_15
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 36406881 - 36406561
Alignment:
| Q |
18 |
gtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgtcctgcttaatgttgaaggcctaaatttgta |
117 |
Q |
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| T |
36406881 |
gtatacaaggctataagtaggacaatggtcaacttagtgttagtgagaggcatgaagtttgatgatatgtcctgcttaatgttgaaggcctaaatttgta |
36406782 |
T |
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| Q |
118 |
atagatattttttaagagaatagaaataggtttgacctgtaaaaaatttaactaatgttaattgtttac-attatgtgaagtttgaatttgttgcattta |
216 |
Q |
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| T |
36406781 |
atagatat-ttttaagagaatagaaataggtttgacctgtaaaaaatttaactaatgttaattgtttacaattatgtgaagtttgaatttgttgcattta |
36406683 |
T |
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| Q |
217 |
ggagnnnnnnnnaggaaataggttacattaagtatctataagccagaattagcataagctcgagcgttacatgttacatgaagtcactacgctttaggca |
316 |
Q |
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| T |
36406682 |
ggagttttttttaggaaataggttacattaagtatctataagccagaattagcataagctcgagcgttacatgttacattaagtcactacgctttaggct |
36406583 |
T |
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| Q |
317 |
tgtgtacatacaagtttattca |
338 |
Q |
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||| |||||||||||||||||| |
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| T |
36406582 |
tgtatacatacaagtttattca |
36406561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 36428961 - 36428819
Alignment:
| Q |
18 |
gtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgtcctgctta-atgttgaaggcctaaatttg- |
115 |
Q |
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| T |
36428961 |
gtatacaaggctataaataggcctacactcaaattagtgttggtgaaaggcgtcaagtttgatgttatgtctcttttagatgtttaaggcctaaatttta |
36428862 |
T |
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| Q |
116 |
taatagatattttttaagagaatagaaataggtttgacctgtaa |
159 |
Q |
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| T |
36428861 |
tgatagatattttt-acgagaataggaataggtttgacctgtaa |
36428819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 36375856 - 36375794
Alignment:
| Q |
97 |
tgttgaaggcctaaatttgtaatagatattttttaagagaatagaaataggtttgacctgtaaa |
160 |
Q |
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| T |
36375856 |
tgttgaaggcctaaattcctaatatatatttttga-gagaatagaaataggtttaacctgtaaa |
36375794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 36428793 - 36428738
Alignment:
| Q |
154 |
ctgtaaaaaatttaactaatgttaattgtttac-attatgtgaagtttgaatttgt |
208 |
Q |
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| T |
36428793 |
ctgtaaaaaattgaactaatgttaattgtttacaattatgtgacgtttgagtttgt |
36428738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 36435429 - 36435295
Alignment:
| Q |
18 |
gtatacaaggctataaataggacaatggtcaacttagtgttagtgagaggcatca-agtttggtgatatg----tcctgcttaatgttgaaggcctaaat |
112 |
Q |
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| T |
36435429 |
gtatacaaggttttaaataggacaatggtcaatttagtgtaagtgagatgcctcagagtttgatgatatgccccccctgctaattgttgaggtcctgaat |
36435330 |
T |
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| Q |
113 |
ttgtaatagatattttttaagagaatagaaataggt |
148 |
Q |
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| T |
36435329 |
tcgtaataga-aaattttaagagaatagaaagaggt |
36435295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 36418831 - 36418779
Alignment:
| Q |
157 |
taaaaaatttaactaatgttaattgtttac-attatgtgaagtttgaatttgt |
208 |
Q |
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||||||||| || ||||||||||||||||| |||||||||||||||| ||||| |
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| T |
36418831 |
taaaaaattgaattaatgttaattgtttacaattatgtgaagtttgagtttgt |
36418779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 36418966 - 36418904
Alignment:
| Q |
25 |
aggctataaataggacaatggtcaacttagtgttagtgagaggcatcaagtttggtgatatgt |
87 |
Q |
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|||||||||||||| ||| |||| ||||||||||||| |||||||||||||| || ||||| |
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| T |
36418966 |
aggctataaataggccaacactcaaattagtgttagtgaaaggcatcaagtttgatgttatgt |
36418904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 36428709 - 36428635
Alignment:
| Q |
236 |
aggttacattaagtatctataagccagaattagcataagctcgagcgttacatgttacatgaagtcactacgctt |
310 |
Q |
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| T |
36428709 |
aggttacattgagtagctataagccagaattagcatatgcccttaagttacaggttacattaagtcactatgctt |
36428635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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