View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_17 (Length: 319)
Name: NF6289_low_17
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 35096372 - 35096567
Alignment:
| Q |
1 |
gaacttaatggggtggccacaacaaaaattgagaagcttatagttgagctgcagggatgtcatccacatccaattgatcctgctgagcagagaatcattg |
100 |
Q |
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| T |
35096372 |
gaacttaatggggtggccacagcaaaaattgagcagcttatagttgaattacagggatgtcatccaaatccaattgaacctgctgatcagagaatcattg |
35096471 |
T |
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| Q |
101 |
atggttttacttacttcaagctcaacaatttcgagtaaacttacttgcaaattcaataaaattttaatatgatgcctatagttagttcatattcaaatat |
200 |
Q |
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| T |
35096472 |
atggttttacgtacttcaagctcaacaatttcaagtaa----acttgcaaattaaataaaattttaatatgatgcctatagttagttcattttcgaatat |
35096567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 35109749 - 35109892
Alignment:
| Q |
1 |
gaacttaatggggtggccacaacaaaaattgagaagcttatagttgagctgcagggatgtcatccacatccaattgatcctgctgagcagagaatcattg |
100 |
Q |
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| T |
35109749 |
gaacttaatgaggtggccactgcaaaaattgaggaaattatagttgagttgcagggatgtcatccacaaccaattgatcctgctgagcagagaatcattg |
35109848 |
T |
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| Q |
101 |
atggttttacttacttcaagctcaacaatttcgagtaaacttac |
144 |
Q |
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| T |
35109849 |
atggttttacttacttcaagctcaacaatttcgagtaaacttac |
35109892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 35102524 - 35102636
Alignment:
| Q |
74 |
ttgatcctgctgagcagagaatcattgatggttttacttacttcaagctcaacaatttcgagtaaacttacttgcaaattcaataaaattttaatatgat |
173 |
Q |
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| T |
35102524 |
ttgatcctgctgagcagagaataatag------ttacctacttcaagctcaacaatttcgagtaaactt----gaaaattaaataaaattttaatatgat |
35102613 |
T |
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| Q |
174 |
gcctatagttagttcatattcaa |
196 |
Q |
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| T |
35102614 |
gcctatagttagttcatattcaa |
35102636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 35102481 - 35102527
Alignment:
| Q |
1 |
gaacttaatggggtggccacaacaaaaattgagaagcttatagttga |
47 |
Q |
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| T |
35102481 |
gaacttaatggggtggccacagcaaaaattgagcagcttatagttga |
35102527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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