View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_18 (Length: 305)
Name: NF6289_low_18
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42624946 - 42624659
Alignment:
| Q |
1 |
atctgagtgaatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgattcagttgattcatgaac |
100 |
Q |
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| T |
42624946 |
atctgaatggatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgattcagttgattcatgaac |
42624847 |
T |
|
| Q |
101 |
attttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgtaggctaaaatcaaagacttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42624846 |
attttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgcaggctaaaatcaaagacttta |
42624747 |
T |
|
| Q |
201 |
tgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattctatctaatactggtatgt |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42624746 |
tgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattctatctaatactggtatgt |
42624659 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35433101 - 35433166
Alignment:
| Q |
16 |
catactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttg |
81 |
Q |
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||||| ||||||||| |||||||| |||||||||| ||| | ||||||||||||| ||||||||| |
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| T |
35433101 |
catacgacaatactccacactgtccacccttcttgcatctccgtggttgagacgatcattaatttg |
35433166 |
T |
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