View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6289_low_20 (Length: 299)

Name: NF6289_low_20
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6289_low_20
NF6289_low_20
[»] chr2 (1 HSPs)
chr2 (16-299)||(17595202-17595485)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 17595202 - 17595485
Alignment:
Q  16 atattaaccatattgtttgctcttttttgttactttgtgttacgccctccactcaacaaaataatagtnnnnnnnncagatgaagataaatgggatgcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||    
T  17595202 atattaaccatattgtttgctcttttttgttactttgtgttacgccctccactcaacaaaataatagtaaaaaaaacagatgaagataaatgggatgcat 17595301  T
Q  116 accaattaacctatgtattagttggtgttattgcatgtgcaactgttactgaatttcttggtacacattcagttgttggagcattgatttttgggttaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17595302 accaattaacctatgtattagttggtgttattgcatgtgcaactgttactgaatttcttggtacacattctgttgttggagcattgatttttgggttaat 17595401  T
Q  216 tcttccacgtggaaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattgttttttgc 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17595402 tcttccacgtggaaagtttacagacatgttgattgaacaaacagaagatattgcatcaggttatttggcaccattgttttttgc 17595485  T

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