View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_22 (Length: 293)
Name: NF6289_low_22
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 35 - 277
Target Start/End: Original strand, 3802837 - 3803079
Alignment:
| Q |
35 |
tcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatccggggcttg |
134 |
Q |
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| T |
3802837 |
tcatcacggatttcaccatcatgctgctaacatagtttccaagagaaattgaagccatacaaagtgaacttccaaagctttttatgccatccggggcttg |
3802936 |
T |
|
| Q |
135 |
accattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatatactcaaggaactagcc |
234 |
Q |
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| T |
3802937 |
accattgaagaactccaactgacccacatacacaaaaacttctgaagccccaacaagaacatactgtggaatttgatagaatatactcaaagaactagcc |
3803036 |
T |
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| Q |
235 |
ttctcttccggcttaacatgtttaagccgtacaaactctgttg |
277 |
Q |
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| T |
3803037 |
ttctcttccggcttaacatgtttaagccgtacaaactctgttg |
3803079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 397963 - 397758
Alignment:
| Q |
19 |
cctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagcttttta |
118 |
Q |
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| T |
397963 |
cctctagcagtgaatatcatcaccaatttcaccatcatgctgctaacatagtttccaagagaaattgatgccatacaaagtgaacttccaaagcttttta |
397864 |
T |
|
| Q |
119 |
tgccatccggggcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatat |
218 |
Q |
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| T |
397863 |
tgccatcaggtgcttgaccattgaagaactccaactgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgacagaatat |
397764 |
T |
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| Q |
219 |
actcaa |
224 |
Q |
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|||||| |
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| T |
397763 |
actcaa |
397758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 179
Target Start/End: Complemental strand, 2745903 - 2745785
Alignment:
| Q |
61 |
ctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgaccca |
160 |
Q |
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|||||||| ||||| | || ||||| | ||||||||||| ||||||||||||||| | ||||| || || || |||||| |||||||| ||||| | |
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| T |
2745903 |
ctaacatagtttcctaatgatattgaagtcatacaaagtgcacttccaaagcttttcaatccatcaggtgcctgtgaattgaaaaactccaattgaccaa |
2745804 |
T |
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| Q |
161 |
catacataaaaacttctga |
179 |
Q |
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| T |
2745803 |
catacatgaaaacttctga |
2745785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 52809497 - 52809666
Alignment:
| Q |
54 |
catgctgctaacataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaac |
153 |
Q |
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| T |
52809497 |
catgctactcacatagtttccaagagaaattgaagccatacaaagtgaactcccaaaactttttattccatctggtgcttgaccattaaagaactccaat |
52809596 |
T |
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| Q |
154 |
tgacccacatacataaaaacttctgaagcaccaacaagaacatactgtggaatttgatagaatatactca |
223 |
Q |
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| T |
52809597 |
tgacccacatacatgaaaacctctgaagcaccaatcagaacatactgtggaatttgatagaatatactca |
52809666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 170
Target Start/End: Original strand, 4708319 - 4708425
Alignment:
| Q |
64 |
acataatttccaagagaaattgatgccatacaaagtgaacttccaaagctttttatgccatccggggcttgaccattgaagaactccaactgacccacat |
163 |
Q |
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||||| || ||||| ||||| |||| ||| ||||||| |||||| || || |||| |||||| || | |||| ||||||||||||| ||||| || |||| |
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| T |
4708319 |
acatagttgccaagggaaatggatgtcatgcaaagtgcacttccgaaactctttaagccatcaggtgtttgagcattgaagaactctaactgccctacat |
4708418 |
T |
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| Q |
164 |
acataaa |
170 |
Q |
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||||||| |
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| T |
4708419 |
acataaa |
4708425 |
T |
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