View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_25 (Length: 251)
Name: NF6289_low_25
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 17027409 - 17027642
Alignment:
| Q |
1 |
tctcggtgagtgtcgtcaattttcctgaaggtcaggcataatatgtttgtgaccaacatgaaagaaaagttattagtgacaaactaacacaaaaaacaaa |
100 |
Q |
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| T |
17027409 |
tctcggtgagtgtcgtcaattttcctgaaggtcaggcataat--gtttgtgaccaacatgaaagcaaagtta---gtgacaaactaacacaaaaaacaaa |
17027503 |
T |
|
| Q |
101 |
atataagttaataaactatacctagaaatgccttaatttctgcaacactcgagcacctgacaagcttaaaagcatcgatgaaacagggctaactaagagg |
200 |
Q |
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| T |
17027504 |
atataagttaataaactatacctagaaatgccttaatttctgcaacactcgagcacctgacaagcttaaaagcgtcgatgaaacggggctaactaagagg |
17027603 |
T |
|
| Q |
201 |
aaggatctcaatattatataagggctttcccactaccta |
239 |
Q |
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| T |
17027604 |
aaggatctcaatattatataagggctttcccgctaccta |
17027642 |
T |
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