View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_3 (Length: 530)
Name: NF6289_low_3
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 2579438 - 2579900
Alignment:
| Q |
25 |
caacgatcataaaacaaagaaaattagtctaaactgataagtgttatacaagaacccaaaataaaatattcacctgtaatttcccctaggaatccatatg |
124 |
Q |
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| T |
2579438 |
caacgatcataaaacaaaggaaattagtctaaactgataagtgttatacaagaacccaaaataaaatattcacctgtaatttcccctaggaatccatatg |
2579537 |
T |
|
| Q |
125 |
acgaaatcaagaaaatgatgcgattcagtggtgtcattaatggatactttcctggtggatacttgctcacaattggagtagcaaatggacttgctttgca |
224 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2579538 |
acgaaatctagaaaatgatgcgattcagtggtgtcattaatggataatttcctggtggatacttgctcacaattggagttggaaatggacttgctttgca |
2579637 |
T |
|
| Q |
225 |
aggaaccatgttaacctcaaatcaagcttcacaaatagaatatagtgttaatgtgaatattattatagtccccaccaatgaaagtcttactaaaaataat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
2579638 |
aggaaccatgttaacctcaaatcaagcttcacaaatagaatatagtgttaatgtgaatattattttggtccccaccaatgaaagtcttactcaaaataat |
2579737 |
T |
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| Q |
325 |
gagaataaaattactcccgattttgaagttgacggtgaattactttcatattagtcatatattgagatgtcacctttactagttcttataaagttgtgcc |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2579738 |
gagaataaaattactcccgattttgaagttgacggtgaattactttcatattagtcatatattgagatgtcacctttactagttcttataaagttgtgcc |
2579837 |
T |
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| Q |
425 |
tattgtgcttaaacttgttaatacgtcaacattgataccagttagtcaaaccatttctcttga |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2579838 |
tattgtgcttaaacttgttaatacgtcaacattgataccaattagtcaaaccatttctcttga |
2579900 |
T |
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