View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_33 (Length: 226)
Name: NF6289_low_33
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34697197 - 34697410
Alignment:
| Q |
1 |
atttggatcaccagatggatcagaacaccagaaatcgtctcctacacgtccaagggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctcc |
100 |
Q |
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| T |
34697197 |
atttggatcaccagatggatcagaacaccagaaatcatctcctacacgtccaagggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctcc |
34697296 |
T |
|
| Q |
101 |
atgctggcaataactccattgcctttgaaatgtttcttcactgatgaggttagtgctttgtaataggctttagcaagctcgacacgtccaccatactcct |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34697297 |
atgctggcaataactccattgccattgaaatgtttcttcactgatgaggtcagtgctttgtaataggctttagcaagctcaacacgtccaccatactcct |
34697396 |
T |
|
| Q |
201 |
ctgatagcatctca |
214 |
Q |
| |
|
|||||||||||||| |
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| T |
34697397 |
ctgatagcatctca |
34697410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 43638221 - 43638387
Alignment:
| Q |
47 |
cgtccaagggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgcctttgaaatgtttcttcactgatg |
146 |
Q |
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|||||||| ||||||| |||||| ||||||| | ||| |||||||| || | ||| |||| ||| || ||||||||||||||||||||| |||| || |
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| T |
43638221 |
cgtccaagtgaaatggtttctgtaccaaggaacatgaaatcgttgcattgttgcatactggaaatgacaccattgcctttgaaatgtttcctcacggaat |
43638320 |
T |
|
| Q |
147 |
aggttagtgctttgtaataggctttagcaagctcgacacgtccaccatactcctctgatagcatctc |
213 |
Q |
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| T |
43638321 |
cagttagtgccttgtagtacgcttttgcaagctcaactcgaccaccatattcctcagacagcatctc |
43638387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 488529 - 488429
Alignment:
| Q |
44 |
acacgtccaagggaaatggcttctgtgccaaggagaaagaagtcgttgcaatgctccatgctggcaataactccattgcctttgaaatgtttcttcactg |
143 |
Q |
| |
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||||| |||||||| |||||||| || ||||| | | ||| || |||||||| |||||||| ||||| || ||||| || ||||||||||| ||||||| |
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| T |
488529 |
acacgaccaagggatatggcttcagttccaagcaacatgaaatcattgcaatgttccatgctagcaatgacaccattaccattgaaatgttttttcactg |
488430 |
T |
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| Q |
144 |
a |
144 |
Q |
| |
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| |
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|
| T |
488429 |
a |
488429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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