View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6289_low_9 (Length: 425)
Name: NF6289_low_9
Description: NF6289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6289_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 408
Target Start/End: Complemental strand, 913768 - 913374
Alignment:
| Q |
15 |
aatgcgaataacatgaacttcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcatttt |
114 |
Q |
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| T |
913768 |
aatgcgaataacatgaacttcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--catttt |
913671 |
T |
|
| Q |
115 |
gtaaacactaaagcaaattcaacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaa |
214 |
Q |
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| T |
913670 |
gtaaacactaaagcaaattcaacgcacggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaa |
913571 |
T |
|
| Q |
215 |
caaacacttcatctgaaaactgaaaattcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaat |
314 |
Q |
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| T |
913570 |
caaacacttcatctgaaaactgaaaattcaaaaaccaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaat |
913471 |
T |
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| Q |
315 |
tacataacctaatacaataaagagacagtgtcattactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaacc |
408 |
Q |
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| T |
913470 |
tacataacctaatacagtaaaaagacagtgtcattactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaacc |
913374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 48 - 408
Target Start/End: Original strand, 888681 - 889042
Alignment:
| Q |
48 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaacgcacggtgag |
147 |
Q |
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| T |
888681 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaattcaacgcacggtgag |
888778 |
T |
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| Q |
148 |
ataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
247 |
Q |
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| T |
888779 |
ataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
888878 |
T |
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| Q |
248 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacaataaagagacagtgtca |
347 |
Q |
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| T |
888879 |
accaacagaaatttaatctgtttgcatattactctcactaatcatgcaatgcagagggatattcaattacataacctaatacagtaaaaagacagtgtca |
888978 |
T |
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| Q |
348 |
ttactcattaactacacaattaccggtacc---gagtctttatcattactaaatagattcaacc |
408 |
Q |
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| T |
888979 |
ttactcattaactacacaattaccggtacccatgtgtctttatcattactaaatagattcaacc |
889042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 1002690 - 1002602
Alignment:
| Q |
48 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaac |
137 |
Q |
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| T |
1002690 |
acaagaatttccaaacattt-accttctcaggatcctcatttcacagatttattttcacatcattttgcaaacactaaagcaaattcaac |
1002602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 1002496 - 1002403
Alignment:
| Q |
133 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
226 |
Q |
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|||| |||||||||||| || |||||||||||| || ||| ||||||| | ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
1002496 |
tcaatgcacggtgagatgaaagcaaataacatgatcatcagattggacgcgagttactaccgttataatataagaaaccaaacaagcacttcat |
1002403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 1002189 - 1002155
Alignment:
| Q |
345 |
tcattactcattaactacacaattaccggtaccga |
379 |
Q |
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| T |
1002189 |
tcattactcattaactacacaattaccggtaccga |
1002155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 913786 - 913739
Alignment:
| Q |
133 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggac |
180 |
Q |
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||||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
913786 |
tcaacgcacggtgagataaatgcgaataacatgaacttcagattggac |
913739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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