View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_high_1 (Length: 721)

Name: NF6290_high_1
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_high_1
NF6290_high_1
[»] chr7 (1 HSPs)
chr7 (18-711)||(35829218-35829914)


Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 35829914 - 35829218
Alignment:
Q  18 accttcaactctgaatcagatcctttttcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgcaacactgctagaggaggaaaac 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  35829914 accttcaactctgaatcagaccctttttcaaaaatatgttttacggtacgtgaaatatctgaaacagtttttggatgtaacactgctagaggaggaaaat 35829815  T
Q  118 ggtgtatgttgccaaagtcctttgcagcatcttcattgtcctttaagctcaaatgtccatcaaaggattgtgattgtagtgatatgataacatcataggg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35829814 ggtgtatgttgccaaagtcctttgcagcatcttcattgtcctttaagctcaaatggccatcaaaggattgtgattgtagtgatatgataacatcataggg 35829715  T
Q  218 tggaatttgaactaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaaggattagaattataatggttttggtaaat 317  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35829714 tgaaatttgaactaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaaggattagaattataatggttttggtaaat 35829615  T
Q  318 gaaaatatgacatgttttgagaaactaacaagttttaaaaccatga-nnnnnnnncttcttataaaaattgcttaataagagagggggttgaatactgtt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  35829614 gaaaatatgacatgttttgagaaactaacaagttttaaaaccatgatttttttttcttcttataaaaattgcttaataagagagggggttgaatactgtt 35829515  T
Q  417 ctgccataaggaaatgtttgatgcaaatgaacagttgagacgacagtttgaagcggtcaccaccttttataggcaaacctgatagtctgatggaggtgtc 516  Q
    |||| |||||||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35829514 ctgctataaggaaatgtttgatgcaaatgaaaagttgagaagacaatttgaagaggtcaccaccttttataggcaaacctgatagtctgatggaggtgtc 35829415  T
Q  517 cttgaggtgtgtttgatgcaccttgttatggtaacaaatttttcatcatgtgtatattggtcatagaaacaaagtacaagtaaaataa--nnnnnnnncc 614  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||           |    
T  35829414 cttgaggtgtgtttgatgcaccttgtaatggtaacaaatttttcatcatgtgtatattggtcatagatacaaagtacaagtaaaataattattatttttc 35829315  T
Q  615 ccacaagttccattcgcgccggagtaatcatatccaaagtgtaccggaaattaaatgtgagtacctctttcgattgtgtctttttcattctcctttg 711  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35829314 ccataagttccattcgcgccggagtaatcatatccaaaatgtaccggaaattaaatgtcagtacctctttcgattgtgtctttttcattctcctttg 35829218  T

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