View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_high_11 (Length: 420)
Name: NF6290_high_11
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 408
Target Start/End: Complemental strand, 25574625 - 25574235
Alignment:
| Q |
16 |
agacacagctcacaaatcgacatgaataataatttnnnnnnntaaataaattatttgaacgtaatcacatgtatgtattggtgtcatgtcaatgtcagac |
115 |
Q |
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| T |
25574625 |
agacacagctcacaaatcgacatgaataataatttaaaaaaataaataaattatttgaacgtaatcacatgtatgtatcggtgtcatgtcaatgtcagac |
25574526 |
T |
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| Q |
116 |
tcagacacgtctttgatcagaggtgtcagtactaccacaaacatgaaagtaatttcatttacaatataaaaatgtatgcatagacgaacttaataacata |
215 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
25574525 |
tcagacacgtctttgatcagaggtgttagtactaccacaaacatgaaagtaatttcatgtaaaatataaaaatgtatgcatagacgaacttaataacata |
25574426 |
T |
|
| Q |
216 |
ttttcgttttattttataatgacnnnnnnnggaagagtaattttgatagaagacaggttaaaatgcatgaataaaaatagtaagaaaggataaaccctaa |
315 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25574425 |
ttttcgttttatttcataatgacaaaaaatggaagagtaattttgatcga--acaggttaaaatgcatgaataaaaatagtaagaaaagataaaccctaa |
25574328 |
T |
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| Q |
316 |
aaacaaggcatgaaaatatcgaacatgtttagttgaatgcggtgattaacattcaacaacagagcgaaagtgtagcaaaaagagtgatgaaac |
408 |
Q |
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| T |
25574327 |
aaacaaggcatgaaaatatcgaacatgtttagttgaatgcggtgattaacattcaacaacagagcgaaagtgtagcaaaaagagtgatgaaac |
25574235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 9895168 - 9895196
Alignment:
| Q |
59 |
aaataaattatttgaacgtaatcacatgt |
87 |
Q |
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| T |
9895168 |
aaataaattatttgaacgtaatcacatgt |
9895196 |
T |
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