View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_high_15 (Length: 349)

Name: NF6290_high_15
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_high_15
NF6290_high_15
[»] chr5 (31 HSPs)
chr5 (179-330)||(28809981-28810133)
chr5 (69-162)||(28812342-28812435)
chr5 (1-70)||(18520917-18520986)
chr5 (1-65)||(2740277-2740341)
chr5 (1-63)||(28177780-28177842)
chr5 (1-65)||(35785202-35785266)
chr5 (1-63)||(6679703-6679765)
chr5 (1-63)||(35943925-35943987)
chr5 (1-70)||(13811650-13811719)
chr5 (2-70)||(36732976-36733044)
chr5 (1-74)||(33149671-33149744)
chr5 (3-63)||(2252203-2252263)
chr5 (1-65)||(14831817-14831881)
chr5 (9-65)||(36875644-36875700)
chr5 (1-65)||(40145410-40145474)
chr5 (1-65)||(42414335-42414399)
chr5 (1-63)||(15409643-15409705)
chr5 (1-63)||(26720521-26720583)
chr5 (1-63)||(26990270-26990332)
chr5 (3-63)||(3921300-3921360)
chr5 (5-63)||(10356639-10356698)
chr5 (1-65)||(33825357-33825421)
chr5 (1-74)||(16327895-16327968)
chr5 (5-74)||(39688934-39689003)
chr5 (2-77)||(9603804-9603879)
chr5 (78-164)||(11100688-11100772)
chr5 (1-63)||(31008993-31009055)
chr5 (103-158)||(813816-813871)
chr5 (2-65)||(6260035-6260098)
chr5 (30-68)||(21370014-21370052)
chr5 (1-42)||(25914930-25914970)
[»] chr4 (36 HSPs)
chr4 (1-70)||(50052461-50052530)
chr4 (1-65)||(50526204-50526268)
chr4 (3-65)||(6034047-6034109)
chr4 (1-63)||(40574784-40574846)
chr4 (1-71)||(48183082-48183152)
chr4 (1-70)||(480480-480549)
chr4 (1-70)||(29239884-29239953)
chr4 (1-65)||(11511495-11511559)
chr4 (1-77)||(23608226-23608302)
chr4 (1-65)||(41236350-41236414)
chr4 (1-65)||(54473566-54473630)
chr4 (3-63)||(55475196-55475256)
chr4 (2-63)||(31910197-31910258)
chr4 (72-174)||(2320119-2320219)
chr4 (2-65)||(3481657-3481720)
chr4 (3-73)||(29547994-29548064)
chr4 (1-70)||(42044400-42044469)
chr4 (3-63)||(8343198-8343258)
chr4 (3-63)||(19670751-19670811)
chr4 (1-65)||(29234278-29234342)
chr4 (3-63)||(55079749-55079809)
chr4 (1-71)||(29977882-29977952)
chr4 (3-48)||(17983778-17983823)
chr4 (1-70)||(24995140-24995209)
chr4 (3-63)||(32766963-32767023)
chr4 (3-63)||(47986213-47986273)
chr4 (3-63)||(50813927-50813987)
chr4 (72-142)||(31011039-31011107)
chr4 (1-71)||(47104541-47104611)
chr4 (1-63)||(18769114-18769176)
chr4 (1-63)||(53352599-53352660)
chr4 (3-48)||(18924530-18924575)
chr4 (3-60)||(28480303-28480360)
chr4 (3-60)||(28481178-28481235)
chr4 (3-60)||(28482053-28482110)
chr4 (3-63)||(44536781-44536840)
[»] chr7 (41 HSPs)
chr7 (1-77)||(7389380-7389456)
chr7 (1-65)||(19329845-19329909)
chr7 (1-70)||(19436220-19436289)
chr7 (1-65)||(3434565-3434629)
chr7 (1-67)||(3783996-3784062)
chr7 (1-63)||(35522881-35522943)
chr7 (1-65)||(36361946-36362010)
chr7 (1-63)||(46374835-46374897)
chr7 (1-70)||(8080416-8080485)
chr7 (5-65)||(4999551-4999611)
chr7 (1-65)||(35137536-35137600)
chr7 (1-65)||(36362029-36362093)
chr7 (1-65)||(38267043-38267107)
chr7 (7-70)||(35468894-35468957)
chr7 (1-63)||(21234406-21234468)
chr7 (1-63)||(39255956-39256018)
chr7 (1-70)||(38837215-38837284)
chr7 (1-70)||(40957705-40957774)
chr7 (2-70)||(10343597-10343665)
chr7 (3-63)||(22343366-22343426)
chr7 (3-63)||(32564461-32564521)
chr7 (1-68)||(3694367-3694434)
chr7 (1-63)||(18207185-18207247)
chr7 (1-63)||(46033834-46033896)
chr7 (3-63)||(8238217-8238278)
chr7 (3-63)||(38044202-38044262)
chr7 (7-63)||(40846152-40846208)
chr7 (3-63)||(41915746-41915806)
chr7 (12-63)||(31735889-31735940)
chr7 (19-70)||(11044186-11044237)
chr7 (5-63)||(26296649-26296707)
chr7 (3-63)||(36208178-36208238)
chr7 (3-63)||(41423687-41423747)
chr7 (4-63)||(2318279-2318338)
chr7 (86-124)||(12427672-12427710)
chr7 (111-164)||(33609065-33609118)
chr7 (1-42)||(42972978-42973018)
chr7 (1-70)||(45223040-45223109)
chr7 (3-63)||(7727911-7727971)
chr7 (1-65)||(32045840-32045904)
chr7 (1-65)||(32951526-32951590)
[»] chr2 (35 HSPs)
chr2 (1-69)||(28863454-28863522)
chr2 (1-71)||(9058477-9058547)
chr2 (1-63)||(40613935-40613997)
chr2 (1-65)||(40701481-40701545)
chr2 (1-68)||(19930853-19930920)
chr2 (1-71)||(10249415-10249485)
chr2 (1-74)||(28381688-28381761)
chr2 (1-70)||(33436133-33436202)
chr2 (1-65)||(7465768-7465832)
chr2 (1-65)||(17473023-17473087)
chr2 (1-65)||(32505681-32505745)
chr2 (1-65)||(33436214-33436278)
chr2 (1-63)||(42257198-42257260)
chr2 (1-70)||(20700813-20700882)
chr2 (1-70)||(30915461-30915530)
chr2 (1-65)||(4060688-4060752)
chr2 (1-65)||(5574521-5574585)
chr2 (1-65)||(13438346-13438410)
chr2 (1-65)||(27864707-27864771)
chr2 (1-63)||(38273175-38273237)
chr2 (1-70)||(38882847-38882915)
chr2 (1-63)||(2533129-2533190)
chr2 (1-74)||(17823778-17823851)
chr2 (3-63)||(17820039-17820099)
chr2 (3-63)||(26891539-26891599)
chr2 (3-63)||(43490126-43490186)
chr2 (3-63)||(45097770-45097830)
chr2 (3-65)||(41575140-41575202)
chr2 (3-48)||(2997522-2997567)
chr2 (1-63)||(36168841-36168903)
chr2 (111-164)||(38842998-38843051)
chr2 (3-63)||(15428775-15428835)
chr2 (3-63)||(38732359-38732419)
chr2 (7-62)||(3439985-3440040)
chr2 (3-48)||(13365373-13365418)
[»] chr1 (31 HSPs)
chr1 (1-65)||(27564768-27564832)
chr1 (1-70)||(2581913-2581982)
chr1 (1-65)||(9474909-9474973)
chr1 (1-65)||(44548409-44548473)
chr1 (1-65)||(48716315-48716379)
chr1 (1-65)||(51898716-51898780)
chr1 (1-63)||(32813252-32813314)
chr1 (1-70)||(8346421-8346490)
chr1 (1-65)||(3000322-3000386)
chr1 (1-65)||(37649201-37649265)
chr1 (1-63)||(49811560-49811622)
chr1 (2-71)||(26274429-26274498)
chr1 (1-70)||(38595152-38595221)
chr1 (1-70)||(38632354-38632423)
chr1 (1-65)||(47452353-47452417)
chr1 (3-74)||(45044595-45044666)
chr1 (1-70)||(23597124-23597193)
chr1 (3-63)||(41608528-41608588)
chr1 (3-63)||(50591035-50591095)
chr1 (1-65)||(43135-43199)
chr1 (3-63)||(5959035-5959095)
chr1 (1-65)||(11152411-11152474)
chr1 (1-61)||(26440741-26440801)
chr1 (1-65)||(41758808-41758872)
chr1 (1-65)||(50630461-50630525)
chr1 (1-63)||(37926471-37926533)
chr1 (281-333)||(14127049-14127101)
chr1 (3-63)||(44453984-44454044)
chr1 (1-38)||(13414791-13414828)
chr1 (72-116)||(31259543-31259587)
chr1 (3-63)||(47748448-47748507)
[»] chr3 (40 HSPs)
chr3 (1-72)||(11095386-11095457)
chr3 (1-71)||(54868928-54868998)
chr3 (1-70)||(49607412-49607481)
chr3 (1-65)||(53982014-53982078)
chr3 (1-63)||(26141565-26141627)
chr3 (1-63)||(52629305-52629367)
chr3 (1-65)||(33644203-33644267)
chr3 (1-65)||(35536629-35536693)
chr3 (3-65)||(14623874-14623936)
chr3 (1-74)||(24699987-24700060)
chr3 (1-70)||(27714924-27714993)
chr3 (1-65)||(17470408-17470472)
chr3 (1-65)||(31456692-31456756)
chr3 (1-72)||(33118884-33118955)
chr3 (1-63)||(11347955-11348017)
chr3 (1-63)||(41189797-41189859)
chr3 (1-70)||(36707457-36707526)
chr3 (1-65)||(8076396-8076460)
chr3 (1-65)||(8956765-8956829)
chr3 (1-65)||(13898088-13898152)
chr3 (1-64)||(48587124-48587187)
chr3 (1-63)||(20764948-20765010)
chr3 (1-63)||(47531870-47531932)
chr3 (1-63)||(51419393-51419455)
chr3 (3-63)||(26754700-26754760)
chr3 (78-141)||(37489887-37489948)
chr3 (1-71)||(35965807-35965877)
chr3 (3-64)||(30801768-30801829)
chr3 (5-65)||(41080712-41080771)
chr3 (3-63)||(45058588-45058647)
chr3 (3-61)||(35093592-35093650)
chr3 (104-164)||(20450617-20450677)
chr3 (1-68)||(25407180-25407248)
chr3 (1-65)||(21746214-21746280)
chr3 (3-46)||(36331364-36331407)
chr3 (75-164)||(42217788-42217875)
chr3 (84-141)||(44947157-44947212)
chr3 (6-63)||(36331416-36331473)
chr3 (3-63)||(11907376-11907436)
chr3 (3-63)||(25395368-25395428)
[»] chr8 (31 HSPs)
chr8 (1-71)||(14547919-14547989)
chr8 (1-65)||(504154-504218)
chr8 (1-65)||(5957833-5957897)
chr8 (1-65)||(37038482-37038546)
chr8 (1-63)||(10621120-10621182)
chr8 (1-65)||(1179973-1180037)
chr8 (1-65)||(12831050-12831114)
chr8 (1-65)||(15197336-15197400)
chr8 (1-65)||(23122630-23122694)
chr8 (1-63)||(15048215-15048276)
chr8 (1-74)||(34012329-34012402)
chr8 (1-65)||(20074967-20075031)
chr8 (1-65)||(40423976-40424040)
chr8 (5-71)||(4854900-4854966)
chr8 (1-63)||(43414614-43414676)
chr8 (3-63)||(16383382-16383442)
chr8 (5-77)||(24307830-24307902)
chr8 (3-63)||(34307221-34307281)
chr8 (1-65)||(44507120-44507184)
chr8 (3-63)||(30479509-30479569)
chr8 (1-63)||(10284664-10284726)
chr8 (5-63)||(24307634-24307692)
chr8 (1-70)||(42221513-42221582)
chr8 (78-141)||(13970102-13970163)
chr8 (3-63)||(16056436-16056496)
chr8 (1-48)||(8841465-8841512)
chr8 (3-63)||(17443830-17443890)
chr8 (3-63)||(32032730-32032789)
chr8 (30-65)||(9122198-9122233)
chr8 (13-63)||(25838202-25838252)
chr8 (7-63)||(14055631-14055687)
[»] chr6 (22 HSPs)
chr6 (1-66)||(22880691-22880756)
chr6 (1-74)||(32869672-32869745)
chr6 (1-65)||(17598557-17598621)
chr6 (1-75)||(6209498-6209572)
chr6 (1-71)||(28536519-28536589)
chr6 (1-63)||(31976253-31976315)
chr6 (3-65)||(31953065-31953127)
chr6 (3-63)||(15508059-15508119)
chr6 (3-63)||(15990077-15990137)
chr6 (1-65)||(29857830-29857894)
chr6 (3-63)||(30341395-30341455)
chr6 (1-65)||(31109433-31109497)
chr6 (1-65)||(11427619-11427685)
chr6 (1-63)||(31110794-31110854)
chr6 (1-70)||(15832575-15832644)
chr6 (2-61)||(946383-946442)
chr6 (1-63)||(4231553-4231615)
chr6 (1-70)||(12732480-12732549)
chr6 (1-70)||(23128160-23128229)
chr6 (1-63)||(9379745-9379807)
chr6 (3-65)||(22422053-22422115)
chr6 (72-164)||(20584427-20584517)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-65)||(962-1026)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-65)||(962-1026)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-65)||(4032-4096)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-63)||(10142-10204)
[»] scaffold0347 (1 HSPs)
scaffold0347 (72-141)||(11843-11910)
[»] scaffold0110 (1 HSPs)
scaffold0110 (2-63)||(8897-8958)
[»] scaffold0018 (1 HSPs)
scaffold0018 (3-48)||(152518-152563)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 28810133 - 28809981
Alignment:
Q  179 taaattggaattcaagaaatcaaatctcaaatcccagctaccaaatattattactactaaaacagatttaagatccacgttggggaagcaggcggtgtgg 278  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28810133 taaattgaaattcaagaaatcaaatctcaaatcccagctaccaaatattattactactaaaacagatttaagatccacgttggggaagcaggcggtgtgg 28810034  T
Q  279 -aaatactcacgcaacctgaatctttaatcgctagattattcaaagctagata 330  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28810033 aaaatactcacgcaacctgaatctttaatcgctagattattcaaagctagata 28809981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 28812435 - 28812342
Alignment:
Q  69 ttaaaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataatt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28812435 ttaaaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataatt 28812342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 18520917 - 18520986
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  18520917 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattctt 18520986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2740341 - 2740277
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2740341 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 2740277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28177842 - 28177780
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28177842 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 28177780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35785266 - 35785202
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35785266 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 35785202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6679765 - 6679703
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6679765 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcat 6679703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35943925 - 35943987
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  35943925 cgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcat 35943987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13811719 - 13811650
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||    
T  13811719 cgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 36732976 - 36733044
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||    
T  36732976 gtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33149671 - 33149744
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| || |||||    
T  33149671 cgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaaa 33149744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 2252203 - 2252263
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  2252203 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcat 2252263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14831881 - 14831817
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  14831881 cgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 14831817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 36875644 - 36875700
Alignment:
Q  9 atttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 36875700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40145474 - 40145410
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||    
T  40145474 cgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcatta 40145410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42414335 - 42414399
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||    
T  42414335 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcatta 42414399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15409643 - 15409705
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||||    
T  15409643 cgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcat 15409705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26720583 - 26720521
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||    
T  26720583 cgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26720521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26990332 - 26990270
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||    
T  26990332 cgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26990270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 3921300 - 3921360
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  3921300 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 3921360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 10356698 - 10356639
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatgg-tgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcat 10356639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33825357 - 33825421
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||| ||||||||| |||||||    
T  33825357 cgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcatta 33825421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16327968 - 16327895
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    |||||||||||||| ||||||||||||  | ||||||||||||||||||| | ||| |||||||| | ||||||    
T  16327968 cgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcattacttttaaaa 16327895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 39688934 - 39689003
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    |||||||||||||||||||||||  | ||||||||||| ||||| ||| |||||||||| | ||||||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactcttaaaa 39689003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 9603879 - 9603804
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaataa 77  Q
    ||||||||||||||||| ||||| ||   |||||||  ||||||||||||| |||||||||||| |||||| ||||    
T  9603879 gtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactcttaatataa 9603804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 11100772 - 11100688
Alignment:
Q  78 cgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    |||||||||||||| |||||||||  ||||||||||| || |||| ||| ||||||| ||||||  || |||||| |||||||||||    
T  11100772 cgtttgagcttatagcttatcatt--ttttcttccatctttacccttattattttaactaaaacccatatttaccctttataattta 11100688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31009055 - 31008993
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||||||||||  ||   ||||||| ||||||||||||| ||||||||||    
T  31009055 cgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcat 31008993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 813816 - 813871
Alignment:
Q  103 tttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttat 158  Q
    ||||||||||| ||| |||| |||||| |||||||||| ||||||||||| |||||    
T  813816 tttttcttccaattttacccttatcatattaattaaaatttatgtttaccctttat 813871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 6260035 - 6260098
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||| ||||||||| |||||||| ||| ||||||||| |||||| || ||| ||||||||||||    
T  6260035 gtgttagatttttgcgtgggtgttaaagggtgtattgtcacctatggttgtgtatgtatcatta 6260098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 21370052 - 21370014
Alignment:
Q  30 ggtgtattgccacctaaggatgtctatgtatcattattc 68  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  21370052 ggtgtattaccacctaaggatgtctatgtatcataattc 21370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25914970 - 25914930
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccac 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  25914970 cgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 25914930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50052461 - 50052530
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  50052461 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50526204 - 50526268
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  50526204 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcatta 50526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 6034109 - 6034047
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  6034109 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 6034047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40574846 - 40574784
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 40574784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 48183082 - 48183152
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||    
T  48183082 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactctta 48183152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 480480 - 480549
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||    
T  480480 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29239953 - 29239884
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  29239953 cgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11511495 - 11511559
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  11511495 cgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 11511559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 23608302 - 23608226
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaataa 77  Q
    |||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||| |||||| ||||    
T  23608302 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactcttaatataa 23608226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41236414 - 41236350
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||    
T  41236414 cgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 41236350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 54473566 - 54473630
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  54473566 cgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcatta 54473630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 55475256 - 55475196
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  55475256 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcat 55475196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 31910258 - 31910197
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcat 31910197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 2320119 - 2320219
Alignment:
Q  72 aaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataatttaaaacaaa 171  Q
    ||||| ||||||| |||||||||||||| |  |||||||| ||||| | || |||||||||||| |||||| ||||||||  ||||||||||||||||||    
T  2320119 aaatagcgtttgaccttataacttatcact--ttttcttcaatttttatccttatcattttaatcaaaactcatgtttactctttataatttaaaacaaa 2320216  T
Q  172 aag 174  Q
    |||    
T  2320217 aag 2320219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 3481720 - 3481657
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||||    
T  3481720 gtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcatta 3481657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 29547994 - 29548064
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaa 73  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||| |||||||||| | |||||||    
T  29547994 tgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactcttaaa 29548064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 42044400 - 42044469
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||||||||||||||||||||  || | ||||||||||||||||| |||||||||||||||| ||||    
T  42044400 cgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 8343198 - 8343258
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||| ||| ||||||||| | ||||||||||||||||||||| ||||||||||    
T  8343198 tgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcat 8343258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 19670751 - 19670811
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||| ||| ||||||||||    
T  19670751 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 19670811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29234278 - 29234342
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||  ||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  29234278 cgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcatta 29234342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 55079749 - 55079809
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  55079749 tgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcat 55079809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29977952 - 29977882
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||| ||  |||||||||||||||| || | | |||||||||||| |||||    
T  29977952 cgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactctta 29977882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 17983778 - 17983823
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  17983778 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24995140 - 24995209
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||| |||||| ||||||||||||| |||||||||||| |||||| |||| || |||||||| ||||    
T  24995140 cgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 32767023 - 32766963
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||  ||| ||||||||||    
T  32767023 tgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcat 32766963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 47986273 - 47986213
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| ||||||  | ||||||||||||||||| ||| ||||||||||    
T  47986273 tgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcat 47986213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 50813927 - 50813987
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  |||||||| |||||||||  ||| ||||||||||    
T  50813927 tgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcat 50813987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 31011039 - 31011107
Alignment:
Q  72 aaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaact 142  Q
    ||||| ||||| |||||||||||| |||||  ||||||||||| || |||| |||||||||||||||||||    
T  31011039 aaatatcgtttaagcttataacttctcatt--ttttcttccatatttacccttatcattttaattaaaact 31011107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47104611 - 47104541
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    ||||||| |||||||||||||||||| |  |||||||| || ||||| |||||||| |||||||| |||||    
T  47104611 cgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactctta 47104541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18769176 - 18769114
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| | | ||||||| |  || ||||||||| ||||||||||    
T  18769176 cgtgtcagatttttgtgtgggtgttagagggtgtatgggtacataaggatgtttatgtatcat 18769114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 53352599 - 53352660
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| ||||| |||   ||||||| ||||||||| ||||||||||||||    
T  53352599 cgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcat 53352660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 18924530 - 18924575
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    |||||||||||||||||| | ||||  |||||||||||||||||||    
T  18924530 tgtcagatttttgtgtggatatcaaggggtgtattgccacctaagg 18924575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28480303 - 28480360
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtat 60  Q
    ||||||||||||||||| |||| ||   |||||||| ||||||||| |||||||||||    
T  28480303 tgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28480360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28481178 - 28481235
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtat 60  Q
    ||||||||||||||||| |||| ||   |||||||| ||||||||| |||||||||||    
T  28481178 tgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28481235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28482053 - 28482110
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtat 60  Q
    ||||||||||||||||| |||| ||   |||||||| ||||||||| |||||||||||    
T  28482053 tgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtat 28482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 44536781 - 44536840
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| |||| || |||||||||||||||||   ||| ||||||||||    
T  44536781 tgtcagatttttgtgtggatgtc-aagggtgtattgccacctaaaagtgtttatgtatcat 44536840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7389456 - 7389380
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaataa 77  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||| |||||||||||    
T  7389456 cgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcttaaaataa 7389380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19329909 - 19329845
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19329909 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 19329845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19436220 - 19436289
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||    
T  19436220 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3434629 - 3434565
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3434629 cgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcatta 3434565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3784062 - 3783996
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattatt 67  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  3784062 cgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattatt 3783996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35522943 - 35522881
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  35522943 cgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcat 35522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36361946 - 36362010
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  36361946 cgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcatta 36362010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46374835 - 46374897
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||    
T  46374835 cgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcat 46374897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8080416 - 8080485
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  8080416 cgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 4999551 - 4999611
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  4999551 tcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcatta 4999611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35137600 - 35137536
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  35137600 cgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcatta 35137536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36362093 - 36362029
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||    
T  36362093 cgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcatta 36362029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 38267107 - 38267043
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||||    
T  38267107 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcatta 38267043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 35468894 - 35468957
Alignment:
Q  7 agatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 21234468 - 21234406
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||    
T  21234468 cgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcat 21234406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 39255956 - 39256018
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||    
T  39255956 cgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcat 39256018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38837284 - 38837215
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||| |||||  || ||||||||||||||||||| |||||||||||||||| ||||    
T  38837284 cgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40957774 - 40957705
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||  |||||||||||||||| ||||    
T  40957774 cgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||| ||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 22343426 - 22343366
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  22343426 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 22343366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 32564461 - 32564521
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||| ||||||||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcat 32564521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 3694434 - 3694367
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattc 68  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||| ||| ||| |||||||||||    
T  3694434 cgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcattattc 3694367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18207247 - 18207185
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||| |||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||    
T  18207247 cgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcat 18207185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46033834 - 46033896
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||| ||| |||||||||||||||||| || ||||||||||||    
T  46033834 cgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcat 46033896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 8238278 - 8238217
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccaccta-aggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||    
T  8238278 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcat 8238217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 38044262 - 38044202
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||| ||| ||||||||||    
T  38044262 tgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcat 38044202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 40846152 - 40846208
Alignment:
Q  7 agatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||    
T  40846152 agatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcat 40846208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 41915806 - 41915746
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||| ||| ||||||||||    
T  41915806 tgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 41915746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31735940 - 31735889
Alignment:
Q  12 tttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||    
T  31735940 tttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcat 31735889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 11044237 - 11044186
Alignment:
Q  19 gggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||| | ||||||||||||||||| |||||||||||||||| ||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 26296707 - 26296649
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||| ||||| ||| ||| ||| ||||| ||||||||||||||||||||||||    
T  26296707 tcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcat 26296649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 36208238 - 36208178
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||| ||||||||||||||||||    |||||| |||||||||| ||||||||||||||    
T  36208238 tgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcat 36208178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 41423747 - 41423687
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||  |||||||  |||||||| ||| |||| ||||||||||||||||    
T  41423747 tgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcat 41423687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 2318279 - 2318338
Alignment:
Q  4 gtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||||||||||  ||||| |||||||||| || |||  |||||||||    
T  2318279 gtcagatttttgtgtgggtgtcaagaggtgtcttgccacctatggttgttaatgtatcat 2318338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 12427672 - 12427710
Alignment:
Q  86 cttataacttatcattatttttcttccattttaacccat 124  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  12427672 cttataacttatcattctttttcttccatttttacccat 12427710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 33609118 - 33609065
Alignment:
Q  111 ccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    ||||||| |||| ||| ||||||||||||||  ||||||||| |||||||||||    
T  33609118 ccatttttacccttattattttaattaaaacccatgtttaccctttataattta 33609065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42972978 - 42973018
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccac 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  42972978 cgtgtcagaattttgtgtgggtgt-aaatggtgtattgccac 42973018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45223109 - 45223040
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||| | |||  ||   ||||||||||||||||||||| ||| |||||||| ||||    
T  45223109 cgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctt 45223040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 7727971 - 7727911
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||| ||||  ||||||  |||||||| |||||||||| ||| ||||||||||    
T  7727971 tgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcat 7727911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32045904 - 32045840
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| |||||||||| | |  | |||||||||||||| || | ||||||||||||    
T  32045904 cgtgtcagatttttatgtgggtgtccagtaatatattgccacctaagaatatatatgtatcatta 32045840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32951526 - 32951590
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||||| ||| ||| | ||||||| || |||||  ||||||||||||||||    
T  32951526 cgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcatta 32951590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28863522 - 28863454
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattct 69  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  28863522 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattattct 28863454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9058547 - 9058477
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  9058547 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 9058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 40613935 - 40613997
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40613935 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcat 40613997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 40701545 - 40701481
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  40701545 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 40701481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19930853 - 19930920
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattc 68  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  19930853 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcattattc 19930920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10249415 - 10249485
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |||||    
T  10249415 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactctta 10249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 28381688 - 28381761
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| || |||||    
T  28381688 cgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactcataaaa 28381761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 33436133 - 33436202
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  33436133 cgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7465768 - 7465832
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  7465768 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 7465832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17473087 - 17473023
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  17473087 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcatta 17473023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32505681 - 32505745
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  32505681 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 32505745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33436278 - 33436214
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  33436278 cgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcatta 33436214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42257260 - 42257198
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  42257260 cgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcat 42257198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 20700882 - 20700813
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  20700882 cgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 30915530 - 30915461
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  30915530 cgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4060752 - 4060688
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||||    
T  4060752 cgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcatta 4060688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5574521 - 5574585
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  5574521 cgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 5574585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13438410 - 13438346
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||    
T  13438410 cgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcatta 13438346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27864771 - 27864707
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  27864771 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcatta 27864707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 38273175 - 38273237
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||    
T  38273175 cgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcat 38273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38882847 - 38882915
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  38882847 cgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 2533190 - 2533129
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||    
T  2533190 cgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcat 2533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 17823851 - 17823778
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    ||||||||||||||||||||||||  |    ||||||||||||||||||||| |||||||||||| ||||||||    
T  17823851 cgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactcttaaaa 17823778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17820039 - 17820099
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||  | ||||||||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcat 17820099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 26891539 - 26891599
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||| || |||||||||||    
T  26891539 tgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcat 26891599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 43490186 - 43490126
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||| ||| ||||||||||    
T  43490186 tgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcat 43490126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 45097770 - 45097830
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||||  | ||||||||||||||||||||| ||||||||||    
T  45097770 tgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcat 45097830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 41575202 - 41575140
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||  ||||||| |||||||| ||| |||||||||||||||||||||||    
T  41575202 tgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcatta 41575140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 2997522 - 2997567
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  2997522 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 36168903 - 36168841
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||| ||||||||||||| || ||| | ||||||| || |||||||||||||||||||||    
T  36168903 cgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcat 36168841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 38842998 - 38843051
Alignment:
Q  111 ccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    ||||||| |||||||| ||||||||||||| | ||||||||| |||||||||||    
T  38842998 ccatttttacccatattattttaattaaaattcatgtttaccctttataattta 38843051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15428775 - 15428835
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| |||| ||  ||||||| ||||| ||||||||| ||||||||||    
T  15428775 tgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcat 15428835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 38732419 - 38732359
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  | ||||||| ||| ||||| ||| ||||||||||    
T  38732419 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcat 38732359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 3440040 - 3439985
Alignment:
Q  7 agatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatca 62  Q
    ||||||||||||||||||| |   |||||||||||||||||| |||||| ||||||    
T  3440040 agatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 13365418 - 13365373
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    |||||||||||||||||||||||||  ||| |||||||| ||||||    
T  13365418 tgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagg 13365373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 27564768 - 27564832
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27564768 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcatta 27564832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2581982 - 2581913
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  2581982 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9474909 - 9474973
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9474909 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 9474973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44548409 - 44548473
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  44548409 cgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcatta 44548473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48716315 - 48716379
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  48716315 cgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcatta 48716379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51898716 - 51898780
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  51898716 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcatta 51898780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 32813314 - 32813252
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  32813314 cgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 32813252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8346421 - 8346490
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||||    
T  8346421 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3000386 - 3000322
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  3000386 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcatta 3000322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37649265 - 37649201
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||    
T  37649265 cgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcatta 37649201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49811560 - 49811622
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||    
T  49811560 cgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcat 49811622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 26274498 - 26274429
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  26274498 gtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattctta 26274429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38595221 - 38595152
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||| ||||    
T  38595221 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 38632354 - 38632423
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||| ||||    
T  38632354 cgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47452353 - 47452417
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  47452353 cgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 47452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 45044595 - 45044666
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||| | ||||||||    
T  45044595 tgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactcttaaaa 45044666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23597124 - 23597193
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||| ||||||| |||||  |||||||||||||||| |||||||||||||||||| ||||    
T  23597124 cgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 41608528 - 41608588
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||||||||    
T  41608528 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcat 41608588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 50591035 - 50591095
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  50591035 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 50591095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43199 - 43135
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | ||||||| | ||||||  ||||||||||||||||    
T  43199 cgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcatta 43135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 5959035 - 5959095
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||| ||| ||||||||||    
T  5959035 tgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcat 5959095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 11152411 - 11152474
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| |||| || ||||||||||||||||||| ||||||||| ||||||    
T  11152411 cgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg-tgtctatgtttcatta 11152474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26440801 - 26440741
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatc 61  Q
    |||||||||||||||||||||||| ||| ||||||||| || |||||||||||||| ||||    
T  26440801 cgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatc 26440741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 41758872 - 41758808
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||  ||| | ||||||||||||||||    
T  41758872 cgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcatta 41758808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 50630525 - 50630461
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||||||||||||||||||  |||| | ||||||||||||||||| | ||||||||||||||    
T  50630525 cgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcatta 50630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 37926471 - 37926533
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||||| ||| | ||||||||||||||| ||| ||||||||||||    
T  37926471 cgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcat 37926533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 14127049 - 14127101
Alignment:
Q  281 atactcacgcaacctgaatctttaatcgctagattattcaaagctagatactt 333  Q
    ||||||||| |||||| |||||||||| ||||| || ||||||||||||||||    
T  14127049 atactcacgtaacctggatctttaatcactagactactcaaagctagatactt 14127101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 44454044 - 44453984
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| ||||  | ||||||||||| ||| | ||||||||||||||    
T  44454044 tgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcat 44453984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13414828 - 13414791
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattg 38  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  13414828 cgtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 31259587 - 31259543
Alignment:
Q  72 aaataacgtttgagcttataacttatcattatttttcttccattt 116  Q
    ||||| |||||||||||||| ||||||||| ||||||||| ||||    
T  31259587 aaatagcgtttgagcttatagcttatcattttttttcttctattt 31259543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 47748507 - 47748448
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||| | | ||||||||||    
T  47748507 tgtcagatttttatatgggtgtcaag-ggtgtattgccacctaagggtatttatgtatcat 47748448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11095386 - 11095457
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaa 72  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  11095386 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttaa 11095457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 54868928 - 54868998
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  54868928 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 49607481 - 49607412
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  49607481 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 49607412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 53982078 - 53982014
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  53982078 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcatta 53982014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 26141565 - 26141627
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  26141565 cgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 26141627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 52629367 - 52629305
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  52629367 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 52629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33644267 - 33644203
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||    
T  33644267 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcatta 33644203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35536693 - 35536629
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35536693 cgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcatta 35536629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 14623874 - 14623936
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  14623874 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcatta 14623936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24699987 - 24700060
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    |||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||    
T  24699987 cgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactctaaaaa 24700060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27714924 - 27714993
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||| ||||    
T  27714924 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17470472 - 17470408
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||||||    
T  17470472 cgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcatta 17470408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31456756 - 31456692
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||    
T  31456756 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcatta 31456692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33118884 - 33118955
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaa 72  Q
    ||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| | ||||||    
T  33118884 cgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactcttaa 33118955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11347955 - 11348017
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||    
T  11347955 cgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcat 11348017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41189797 - 41189859
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  41189797 cgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcat 41189859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36707457 - 36707526
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||| | |||||||||||||| ||||    
T  36707457 cgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8076460 - 8076396
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||    
T  8076460 cgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcatta 8076396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8956829 - 8956765
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||| |||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||    
T  8956829 cgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcatta 8956765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13898088 - 13898152
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| ||||||||    
T  13898088 cgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcatta 13898152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48587124 - 48587187
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatt 64  Q
    |||||||||||||| ||| ||||||||| ||||||||||||||||||| | |||||||||||||    
T  48587124 cgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcatt 48587187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 20764948 - 20765010
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| |||  ||||||| |||||||||||||||||||| ||||    
T  20764948 cgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcat 20765010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 47531932 - 47531870
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||| |||||||| ||| ||| |||||||||||| |||||||||||||||||||||    
T  47531932 cgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcat 47531870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51419393 - 51419455
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| | ||||||| || |||||||||||||||||||||    
T  51419393 cgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcat 51419455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 26754760 - 26754700
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| |||| || ||||||||||||||||||| |||||||| |||||    
T  26754760 tgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcat 26754700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 37489948 - 37489887
Alignment:
Q  78 cgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaac 141  Q
    |||||||||||||| ||| |||||  ||||||||||||||||||| ||||||||||||||||||    
T  37489948 cgtttgagcttatagcttctcatt--ttttcttccattttaacccttatcattttaattaaaac 37489887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35965807 - 35965877
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||| ||||||||||||| | ||||||  ||| ||||||||| |||||||||||| |||||    
T  35965807 cgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctta 35965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 30801768 - 30801829
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatt 64  Q
    ||||| |||||||||||||| ||||| ||||||||  ||||||||| |||||||||||||||    
T  30801768 tgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcatt 30801829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 41080771 - 41080712
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||||||| |||||||||||| ||||| |||| || ||||||||||||||||||||||    
T  41080771 tcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtatcatta 41080712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 45058588 - 45058647
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  45058588 tgtcagatttttatgtgggtgtcaag-ggtgtattgccacctaagggtgtttatgtatcat 45058647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 35093650 - 35093592
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatc 61  Q
    ||||||||||||| |||| ||||||||| ||||||| ||||||| | ||||||||||||    
T  35093650 tgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatc 35093592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 20450617 - 20450677
Alignment:
Q  104 ttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    |||| ||||||||  |||| ||| |||||||||||||||||| |||||| |||||||||||    
T  20450617 ttttattccatttctacccttattattttaattaaaacttatatttaccctttataattta 20450677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 25407180 - 25407248
Alignment:
Q  1 cgtgtcagattttt-gtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattc 68  Q
    |||||||||||||| ||||| |||||||  ||| |||||||||||| || ||| |||||||||||||||    
T  25407180 cgtgtcagattttttgtgtgtgtgtcaaggggtatattgccacctatggttgtgtatgtatcattattc 25407248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21746214 - 21746280
Alignment:
Q  1 cgtgtcagatttttgtgtggg--tgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||  |||| |    ||||||||||||||||||||| ||||||||||||    
T  21746214 cgtgtcagatttttgtgtgggggtgtccaggaatgtattgccacctaaggatgtatatgtatcatta 21746280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 36331364 - 36331407
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaa 46  Q
    |||||||||||||||||||||||||  |||| ||||||||||||    
T  36331364 tgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 42217788 - 42217875
Alignment:
Q  75 taacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    ||||||||||||||||| ||| ||||  ||| |||  |||||| |||| ||| |||||||||||||   ||||||||| |||||||||||    
T  42217788 taacgtttgagcttatagcttctcatattttatct--catttttacccttattattttaattaaaatccatgtttaccctttataattta 42217875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 44947212 - 44947157
Alignment:
Q  84 agcttataacttatcattatttttcttccattttaacccatatcattttaattaaaac 141  Q
    |||||||| ||||||||   |||||||||||||| |||| ||||||||||||||||||    
T  44947212 agcttatagcttatcatc--ttttcttccatttttacccttatcattttaattaaaac 44947157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 36331416 - 36331473
Alignment:
Q  6 cagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||| ||||||  |||| ||||||| |||||| ||| ||||||||||    
T  36331416 cagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcat 36331473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 11907436 - 11907376
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| ||||  |   |||||||| ||||||||| ||||||||||||||    
T  11907436 tgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcat 11907376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 25395368 - 25395428
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| | ||  | ||||| ||||| ||||||||| ||||||||||    
T  25395368 tgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcat 25395428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14547989 - 14547919
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  14547989 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactctta 14547919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 504154 - 504218
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  504154 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcatta 504218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5957897 - 5957833
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5957897 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcatta 5957833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37038546 - 37038482
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  37038546 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcatta 37038482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10621120 - 10621182
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  10621120 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcat 10621182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1179973 - 1180037
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||    
T  1179973 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcatta 1180037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12831114 - 12831050
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  12831114 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcatta 12831050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15197400 - 15197336
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  15197400 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcatta 15197336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 23122630 - 23122694
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  23122630 cgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcatta 23122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15048215 - 15048276
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  15048215 cgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcat 15048276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 34012329 - 34012402
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| || |||||    
T  34012329 cgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactcataaaa 34012402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20074967 - 20075031
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  20074967 cgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcatta 20075031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40423976 - 40424040
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||||    
T  40423976 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcatta 40424040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 4854900 - 4854966
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctta 4854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43414614 - 43414676
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  43414614 cgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcat 43414676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 16383442 - 16383382
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  16383442 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 16383382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 24307830 - 24307902
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaataa 77  Q
    |||||||||||||||||||||||  | ||||||||||||||||| ||| |||||||||| | |||||||||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactcttaaaataa 24307902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 34307281 - 34307221
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 34307221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44507120 - 44507184
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||| |||  ||||||| |||||||||| ||||||||||||||||    
T  44507120 cgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcatta 44507184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 30479509 - 30479569
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||| ||| ||||||||||    
T  30479509 tgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcat 30479569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10284664 - 10284726
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||| ||||||||||||||||||||  |||||||| ||| ||||| ||||||||||||||    
T  10284664 cgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcat 10284726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 24307692 - 24307634
Alignment:
Q  5 tcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||  | ||||||||||||||||| ||| ||||||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcat 24307634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42221582 - 42221513
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||||||||||||||||||||| |    ||||||| ||||||||||||| |||||||||||| ||||    
T  42221582 cgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 141
Target Start/End: Original strand, 13970102 - 13970163
Alignment:
Q  78 cgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaac 141  Q
    |||||||||||||| ||||||||   |||||||||||||| |||| ||||||||||||||||||    
T  13970102 cgtttgagcttatagcttatcata--ttttcttccatttttacccttatcattttaattaaaac 13970163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 16056436 - 16056496
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  | ||||||| ||| ||||||||| ||||||||||    
T  16056436 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcat 16056496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8841465 - 8841512
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    ||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  8841465 cgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 17443890 - 17443830
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| |||| ||   |||||||| ||||||||| ||||||||||||||    
T  17443890 tgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcat 17443830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 32032789 - 32032730
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||| ||||||  | ||||||||||||||||| ||| ||||||||||    
T  32032789 tgtcagatttttgtgtggatgtcaag-gatgtattgccacctaagggtgtttatgtatcat 32032730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 9122233 - 9122198
Alignment:
Q  30 ggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9122233 ggtgtattgccacctaagggtgtctatgtatcatta 9122198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 25838252 - 25838202
Alignment:
Q  13 ttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||| |||||||  |||||||||||||||||||| ||||| ||||||    
T  25838252 ttgtgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcat 25838202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 14055631 - 14055687
Alignment:
Q  7 agatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||||   |||||||| ||||||||| |||| |||||||||    
T  14055631 agatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcat 14055687  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22880691 - 22880756
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattat 66  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  22880691 cgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattat 22880756  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32869745 - 32869672
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaa 74  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| || |||||    
T  32869745 cgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatctttactcataaaa 32869672  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 17598621 - 17598557
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||    
T  17598621 cgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcatta 17598557  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6209498 - 6209572
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattcttaaaat 75  Q
    |||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||| ||||    
T  6209498 cgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctttaaat 6209572  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28536519 - 28536589
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctta 71  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||| ||||||||||| ||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcatttttctta 28536589  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 31976315 - 31976253
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  31976315 cgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcat 31976253  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 31953065 - 31953127
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcatta 31953127  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15508059 - 15508119
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  15508059 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 15508119  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15990077 - 15990137
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  15990077 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 15990137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29857894 - 29857830
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||||||    
T  29857894 cgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 29857830  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 30341395 - 30341455
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||    
T  30341395 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcat 30341455  T

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Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31109433 - 31109497
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||  |||||||    
T  31109433 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctattaatcatta 31109497  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11427685 - 11427619
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccaccta--aggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||||||| | ||||||||||||||  ||| ||||||||||||||||    
T  11427685 cgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcatta 11427619  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31110794 - 31110854
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||    
T  31110794 cgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcat 31110854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 15832644 - 15832575
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    ||||||| |||||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| ||||    
T  15832644 cgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 946442 - 946383
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatc 61  Q
    |||||||||||||| || ||||||||| ||||||||  ||||||||||||||||||||||    
T  946442 gtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatc 946383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4231615 - 4231553
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||| ||||| |||| |||||    
T  4231615 cgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcat 4231553  T

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Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12732549 - 12732480
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||    | ||||||||| |||| ||||||||||||||||| ||||    
T  12732549 cgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactctt 12732480  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 23128160 - 23128229
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcattattctt 70  Q
    |||||||||||||||||||||||||||| | ||||||  ||| ||| | ||||||| |||||||||||||    
T  23128160 cgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcattattctt 23128229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9379745 - 9379807
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    ||||||| |||||||| ||||||||||  | ||||||| || |||||||||||||||||||||    
T  9379745 cgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcat 9379807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 22422053 - 22422115
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    ||||||| |||||| || |||||||  | | ||||||||||||||||||||||||||||||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcatta 22422115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 20584427 - 20584517
Alignment:
Q  72 aaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaacttatgtttaccttttataattta 164  Q
    |||||||||||||| |||||| |||||||  ||||||||||| ||| |||  | | ||||||  ||||| |||| ||||||| ||||||||||    
T  20584427 aaataacgtttgagtttataatttatcat--tttttcttccaattttacctttgttattttatctaaaatttatttttacctattataattta 20584517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 962 - 1026
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||| ||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||    
T  962 cgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T

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Target: scaffold1267 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 962 - 1026
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||| ||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||    
T  962 cgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcatta 1026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4096 - 4032
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcatta 65  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||| | ||||||||||||||||    
T  4096 cgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcatta 4032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10142 - 10204
Alignment:
Q  1 cgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||||||||||| ||||| ||||||| | ||||||||||||||| | ||||||||||||||    
T  10142 cgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcat 10204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 11843 - 11910
Alignment:
Q  72 aaataacgtttgagcttataacttatcattatttttcttccattttaacccatatcattttaattaaaac 141  Q
    ||||| |||||||||||||||||||||||  ||||| ||||||||| | || ||||||||| ||||||||    
T  11843 aaatagcgtttgagcttataacttatcat--tttttattccatttttatccttatcatttttattaaaac 11910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 8897 - 8958
Alignment:
Q  2 gtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaggatgtctatgtatcat 63  Q
    |||||| |||||||||| | |||||||| |||||||| ||| ||||||||||||| ||||||    
T  8897 gtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcat 8958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 152563 - 152518
Alignment:
Q  3 tgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagg 48  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||    
T  152563 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagg 152518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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