View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_high_27 (Length: 280)
Name: NF6290_high_27
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 20688088 - 20688351
Alignment:
| Q |
1 |
cggagttcaaactctagccaccaccnnnnnnngaacttatggtgtagtgcacaacaagtttacaagaaattaagacacaagataagaaaa--ccatggaa |
98 |
Q |
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| T |
20688088 |
cggagttcaaactctggccaccaccaaaaaaagaacttatggtgtagtgcacaacaggttaacaagacattaagacacaagataaaaaaaaaccatggaa |
20688187 |
T |
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| Q |
99 |
catgcaaaaataaaaacaatatcaatgagattttgcggggttttcttctctgatggaagtggattcaagcaccactagaggagaaagaagaggtattgga |
198 |
Q |
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| T |
20688188 |
catactaaaataacaacaatatcaatgagattttgcagggttttcttctctgatggaagtggattcaagcaccactagaggagaaagaagaggtattgga |
20688287 |
T |
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| Q |
199 |
cccttactattgaagaaagaattcaaagaagatgatgttgaaccatttccaattaagttctgtg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20688288 |
cccttactattgaagaaagaattcaaagaagatgatgttgaaccatttccaattaagttctgtg |
20688351 |
T |
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