View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_high_29 (Length: 269)
Name: NF6290_high_29
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 46959157 - 46958914
Alignment:
| Q |
16 |
atattgctatgtcatctatgcactatatccaaaaaggcctattattcaaaaaaccaacaacttcaccaaataatcaacaagatttcattgagagtctatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959157 |
atattgctatgtcatctatgcactatatccaaaaaggcctattattcaaaaaaccaacaacttcaccaaataatcaacaagatttcattgagagtctatt |
46959058 |
T |
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| Q |
116 |
gaagaagcttaaatactccctctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaagaccctccctcttatacc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46959057 |
gaagaagcttaaatactccctctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaacaccctccctcttatacc |
46958958 |
T |
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| Q |
216 |
atttttgttgattgtagtaacaataaccctggagctagattcat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46958957 |
atttttgttgattgtagtaacaataaccctggagctagattcat |
46958914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 46956322 - 46956079
Alignment:
| Q |
16 |
atattgctatgtcatctatgcactatatccaaaaaggcctattattcaaaaaaccaacaacttcaccaaataatcaacaagatttcattgagagtctatt |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| ||||| |
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| T |
46956322 |
atattgctatgtcatctatgcactacatccaaaaaggcctattattcaaaaaaccaacaatttcaccaaataaccaacaagatttcatcgagaaactatt |
46956223 |
T |
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| Q |
116 |
gaagaagcttaaatactccctctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaagaccctccctcttatacc |
215 |
Q |
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| T |
46956222 |
ggagaagctcaaacactccttctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaagaccctccctcttatacc |
46956123 |
T |
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| Q |
216 |
atttttgttgattgtagtaacaataaccctggagctagattcat |
259 |
Q |
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|||||||||||||| |||||| ||||| | ||||||||||||| |
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| T |
46956122 |
atttttgttgattgcagtaacgataacaccagagctagattcat |
46956079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 46951952 - 46951721
Alignment:
| Q |
16 |
atattgctatgtcatctatgcactatatccaaaaaggcctattattcaaaaaaccaacaacttcaccaaataatcaacaagatttcattgagagtctatt |
115 |
Q |
| |
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||||||| ||||| |||||| |||||||||| |||||||| ||||||||||| |||||||| |||||| |||||||| | | ||| || |
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| T |
46951952 |
atattgccatgtcctctatgaactatatccagaaaggcctcttattcaaaaa------------gccaaataaccaacaacatttcattcataatctttt |
46951865 |
T |
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| Q |
116 |
gaagaagcttaaatactccctctctcatgctcttttccatttctatcctctttctggccgccttgtcacccacaaaactcaagaccctccctcttatacc |
215 |
Q |
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|||| || ||| |||||||||||| |||| | || |||||||||||| | || || || ||||| || || ||| | |||||||||||| |||||| |
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| T |
46951864 |
agagaaactcaaacactccctctctcttgctttatttcatttctatcctttatcaggtcgtcttgttacacaaaaatcccaagaccctcccacttataat |
46951765 |
T |
|
| Q |
216 |
atttttgttgattgtagtaacaataaccctggagctagattcat |
259 |
Q |
| |
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||||| |||||||| |||||||||||| | |||||||||||||| |
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| T |
46951764 |
attttcgttgattgcagtaacaataactccggagctagattcat |
46951721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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