View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_high_41 (Length: 223)

Name: NF6290_high_41
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_high_41
NF6290_high_41
[»] chr4 (4 HSPs)
chr4 (77-210)||(55265904-55266031)
chr4 (84-148)||(55271852-55271916)
chr4 (18-59)||(29227231-29227272)
chr4 (166-210)||(55271796-55271840)
[»] scaffold0201 (1 HSPs)
scaffold0201 (18-57)||(8516-8555)
[»] scaffold0034 (1 HSPs)
scaffold0034 (18-57)||(101894-101933)
[»] chr7 (1 HSPs)
chr7 (18-57)||(32777695-32777734)
[»] chr2 (1 HSPs)
chr2 (18-59)||(8847529-8847570)
[»] chr5 (2 HSPs)
chr5 (18-54)||(17097790-17097826)
chr5 (21-57)||(42446282-42446318)
[»] chr1 (1 HSPs)
chr1 (21-57)||(7919053-7919089)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 55266031 - 55265904
Alignment:
Q  77 atttctcataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctctgttctgttcagtggttagtt 176  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  55266031 atttctcataaaatatag-aaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctct-----gttcagtggttagtt 55265938  T
Q  177 aacacgtttatcttggctgattgcatgtttttga 210  Q
    ||||||||||||||||||||||||||||||||||    
T  55265937 aacacgtttatcttggctgattgcatgtttttga 55265904  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 55271916 - 55271852
Alignment:
Q  84 ataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactc 148  Q
    ||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||    
T  55271916 ataaaatgtagcaaaaactagcaataagatagttatccttaccgacagacatcccacactcactc 55271852  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29227231 - 29227272
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaagttat 59  Q
    ||||||||||||| |||||||| |||||||| ||||||||||    
T  29227231 gagaaagtagaagaacaatgtgtgtatgagagagaaagttat 29227272  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 55271840 - 55271796
Alignment:
Q  166 agtggttagttaacacgtttatcttggctgattgcatgtttttga 210  Q
    |||||||||||||||| ||| |||| ||||||||||||| |||||    
T  55271840 agtggttagttaacacttttgtctttgctgattgcatgtgtttga 55271796  T

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Target: scaffold0201 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 8555 - 8516
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 57  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8555 gagaaagtagaaggacaatgtgagtatgagagagaaagtt 8516  T

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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 101894 - 101933
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 57  Q
    |||||| |||||||||||||||||||||||| ||||||||    
T  101894 gagaaaatagaaggacaatgtgagtatgagagagaaagtt 101933  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 32777695 - 32777734
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaagtt 57  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  32777695 gagaaagtagaaggacagtgtgagtatgagagagaaagtt 32777734  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 8847570 - 8847529
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaagttat 59  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  8847570 gagaaagtagaagaataatgtgtgtatgagaaagaaagttat 8847529  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 17097790 - 17097826
Alignment:
Q  18 gagaaagtagaaggacaatgtgagtatgagaaagaaa 54  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17097790 gagaaagtagaatgacaatgtgagtatgagatagaaa 17097826  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42446282 - 42446318
Alignment:
Q  21 aaagtagaaggacaatgtgagtatgagaaagaaagtt 57  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  42446282 aaagtagaaggacaatgtgagtaagagagagaaagtt 42446318  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 7919053 - 7919089
Alignment:
Q  21 aaagtagaaggacaatgtgagtatgagaaagaaagtt 57  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  7919053 aaagtagaaggacaatatgagtatgagagagaaagtt 7919089  T

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