View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_high_46 (Length: 204)
Name: NF6290_high_46
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 40771738 - 40771914
Alignment:
| Q |
9 |
aggagcacagacaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggttagtc |
108 |
Q |
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| T |
40771738 |
aggagcaaagacaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggttagtc |
40771837 |
T |
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| Q |
109 |
ggagttaagcaacaacccttacgtcgtacagttcgggcatgtgaaagtgaccgataaactctaagaaaagccgtgat |
185 |
Q |
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| T |
40771838 |
ggagttaagcaacaacccttacgtcgtacagttcgggcatgtgaaagtgaccgataaactctaagaaaagccgtgat |
40771914 |
T |
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Target: chr3 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 21013734 - 21013819
Alignment:
| Q |
19 |
acaccaccaccggcgaggaagagaagatcggaggggctaccaccttcagaaggcagagcaccacgcccaccgtgcggcgaagggtt |
104 |
Q |
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| T |
21013734 |
acaccaccaccagcaagaaagaggagatcagaaggactaccaccttcagaaggaagagcaccacgcccgccgtgcggcgaagggtt |
21013819 |
T |
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