View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_high_6 (Length: 553)
Name: NF6290_high_6
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 42956521 - 42956093
Alignment:
| Q |
1 |
ctatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcactcacataatctctttaattatgaaaggaa |
100 |
Q |
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| T |
42956521 |
ctatatacaatacacttttcttgtgttgttgctttcaaacgaagcagtgattaacatcagtaaaaaatcacacacataatctctttaattatgaaaggaa |
42956422 |
T |
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| Q |
101 |
aaaataagtttggttaaagcaactagcattttcatgatttttgaattactaaggatagtagcggtaacatcagtaacaatgatgtctcaataccgcagaa |
200 |
Q |
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| T |
42956421 |
aaaataagtttggttaaagcaactagcattttcatgatttttgaattactaaggatagtagtggtaacatcagtaacaatgatgtctcaataccgcagaa |
42956322 |
T |
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| Q |
201 |
aaacatattgatgaacgactgcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgttggtgaagacaatcgagctaacttgt |
300 |
Q |
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| T |
42956321 |
aaacatattgatgaaagacagcattttatcagagacatatttgtatgacggttacttgaagtgaagaaagttgtcggtgaagacaatcgagctaacttgt |
42956222 |
T |
|
| Q |
301 |
taaccaaggtggttcctagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtgaacactttaggc |
400 |
Q |
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| T |
42956221 |
taaccaaggtggttcccagatccaattttttgcattgcttgaccggtaaatctagatacctgcgagagttgaattctcaaaagttgtgaacactttaggc |
42956122 |
T |
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| Q |
401 |
tatcactatcttaattcattgtgtttcag |
429 |
Q |
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| T |
42956121 |
tatcactatcttaattcattgtgtttcag |
42956093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 456 - 542
Target Start/End: Complemental strand, 42956095 - 42956009
Alignment:
| Q |
456 |
caggatcattaattgtgtttacaatttaccaagttagtttttgcttatgttttttataaaagctgttgcgataacatctttgttcat |
542 |
Q |
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| T |
42956095 |
caggatcactaattgtgtttacaatttaccaagttagattttgcctatgttttttataaaagctgttgcgataacatctttgttcat |
42956009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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