View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_10 (Length: 436)

Name: NF6290_low_10
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_10
NF6290_low_10
[»] chr5 (24 HSPs)
chr5 (220-413)||(37393082-37393275)
chr5 (220-413)||(37823666-37823859)
chr5 (220-410)||(37382531-37382721)
chr5 (220-337)||(37428578-37428695)
chr5 (220-404)||(37639652-37639836)
chr5 (248-414)||(37435471-37435637)
chr5 (220-404)||(37401068-37401252)
chr5 (220-404)||(37711410-37711594)
chr5 (259-413)||(37532862-37533016)
chr5 (264-413)||(37401247-37401396)
chr5 (264-413)||(37593966-37594115)
chr5 (264-413)||(37696357-37696506)
chr5 (220-404)||(37594110-37594294)
chr5 (220-404)||(37696501-37696685)
chr5 (264-404)||(37711275-37711415)
chr5 (264-413)||(37639508-37639657)
chr5 (220-413)||(37702445-37702638)
chr5 (220-294)||(37413452-37413526)
chr5 (108-209)||(6273241-6273342)
chr5 (111-207)||(14351830-14351926)
chr5 (155-207)||(17644142-17644194)
chr5 (135-209)||(32383804-32383878)
chr5 (155-207)||(18942364-18942416)
chr5 (155-207)||(35456622-35456674)
[»] chr4 (10 HSPs)
chr4 (220-404)||(16843066-16843250)
chr4 (93-208)||(43245591-43245705)
chr4 (93-191)||(13428667-13428764)
chr4 (264-413)||(16843245-16843394)
chr4 (220-413)||(24217936-24218129)
chr4 (232-409)||(16845877-16846054)
chr4 (150-214)||(10006678-10006742)
chr4 (23-67)||(13428627-13428671)
chr4 (38-67)||(43245566-43245595)
chr4 (155-207)||(4414530-4414582)
[»] chr8 (4 HSPs)
chr8 (93-214)||(26403518-26403632)
chr8 (168-207)||(28761630-28761669)
chr8 (107-208)||(38712111-38712212)
chr8 (107-191)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (107-208)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (107-208)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (112-209)||(3794258-3794355)
chr1 (107-209)||(3014060-3014162)
chr1 (145-207)||(32364236-32364298)
chr1 (107-209)||(24638812-24638914)
chr1 (107-209)||(44410825-44410927)
chr1 (107-214)||(40960100-40960207)
[»] chr7 (6 HSPs)
chr7 (93-204)||(35331681-35331793)
chr7 (134-209)||(31813601-31813676)
chr7 (135-209)||(5419006-5419080)
chr7 (168-209)||(46170754-46170795)
chr7 (13-46)||(35331796-35331829)
chr7 (168-208)||(33610704-33610744)
[»] chr3 (3 HSPs)
chr3 (168-207)||(51537138-51537177)
chr3 (155-207)||(29727852-29727904)
chr3 (107-193)||(35054597-35054683)
[»] chr2 (5 HSPs)
chr2 (109-209)||(6065401-6065501)
chr2 (155-207)||(16106651-16106703)
chr2 (155-207)||(21800619-21800671)
chr2 (168-209)||(10810507-10810548)
chr2 (136-209)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (168-207)||(29419718-29419757)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 220 - 413
Target Start/End: Original strand, 37393082 - 37393275
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || ||||||||||||||   |||||||| || |||| ||||||||| ||||| ||||||||||||||| ||   ||||||||  |||||||||    
T  37393082 ctcttaaactcatggaaggacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacctgatggcattgaagactttttac 37393181  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
    |||| |||||||||||||||||||  |||||||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| || |||||    
T  37393182 tctcaaacaacaacttcacaggagatatttcttcaacattctgcaatgctagttccctttatatcctcaatttggctcacaacaatttgacagg 37393275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 220 - 413
Target Start/End: Complemental strand, 37823859 - 37823666
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || |||||||||||||||||  | |||| || |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37823859 ctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37823760  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| |||| || |||||| || ||||| |||| ||||||||||| || |||||    
T  37823759 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagttccctttatatgctcgatttggctcacaacaatttgacagg 37823666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 220 - 410
Target Start/End: Original strand, 37382531 - 37382721
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||||||||||||| |||||||   ||  ||||||| |||| ||||||||||||||||||||||||||| |||  ||  |||||| |  |||||||||    
T  37382531 ctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttccaatcccacgttatggcatttactactttttac 37382630  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaac 410  Q
    |||| ||||||||||||||||||  ||||  ||   |||||||| | ||||| ||||| |||||||||||||| ||||||||||| |||||    
T  37382631 tctcgaacaacaacttcacaggaaacattgatttttcattgtgcaacgcaagttccctgaatgtgctcaatttggctcacaacaatttaac 37382721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 37428695 - 37428578
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||  ||||||||  |||||||||    
T  37428695 ctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttccaattccaccttatggcattgaatactttttac 37428596  T
Q  320 tctctaacaacaacttca 337  Q
    ||||||||||||||||||    
T  37428595 tctctaacaacaacttca 37428578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 220 - 404
Target Start/End: Complemental strand, 37639836 - 37639652
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| ||||||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37639836 ctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacctgatggcattgtatactttttac 37639737  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37639736 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 414
Target Start/End: Complemental strand, 37435637 - 37435471
Alignment:
Q  248 acattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcat 347  Q
    ||||||| || |||| |||||| |||||||||||  ||||||||||| |    ||||||||  ||||||| ||||| |||||||||||| |||||| |||    
T  37435637 acattgacctcagtttcaacaaattgcaaggagacattccaattccatccgatggcattgaatactttttgctctcaaacaacaacttcgcaggagacat 37435538  T
Q  348 ttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggc 414  Q
    |||||||| ||||||||| ||||||||| | || ||||||||||| || ||||||||||| ||||||    
T  37435537 ttcttcaaaattgtgccaagcaagctccatgaacgtgctcaatttggcccacaacaaattgacaggc 37435471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 404
Target Start/End: Original strand, 37401068 - 37401252
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||  ||||||||  |||||| ||    
T  37401068 ctcttaaactcatggaaggacattcagtacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattgaatacttttcac 37401167  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| ||||||| ||||||  |   |||||||| |||||||||||    
T  37401168 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgcaagttcccttcgtaccctcaatttggctcacaacaa 37401252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 220 - 404
Target Start/End: Complemental strand, 37711594 - 37711410
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || |||||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||||||||| | |  |||||| |  |||||| ||    
T  37711594 ctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattccaccatctggcattcaatacttttcac 37711495  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37711494 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37711410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 413
Target Start/End: Complemental strand, 37533016 - 37532862
Alignment:
Q  259 agttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacat 358  Q
    |||| ||||||||| ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||    
T  37533016 agtttcaacaagttacaaggagatcttccaattccacctgatggcattggatacttttcactctcaaataacaacttcacaggagatatttcttcaacat 37532917  T
Q  359 tgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
    | ||| ||||||| | ||| ||||| |||||||| ||||||||||| || |||||    
T  37532916 tctgcaatgcaagttacctgaatgttctcaatttggctcacaacaatttgacagg 37532862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 413
Target Start/End: Original strand, 37401247 - 37401396
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37401247 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37401346  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
     |||| || |||||| |||||||| |||| ||||||||||| || |||||    
T  37401347 aatgccagttccctttatgtgctcgatttggctcacaacaatttgacagg 37401396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 413
Target Start/End: Complemental strand, 37594115 - 37593966
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37594115 caacaactttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37594016  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| ||||||||    
T  37594015 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacagg 37593966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 413
Target Start/End: Complemental strand, 37696506 - 37696357
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37696506 caacaattttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37696407  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| ||||||||    
T  37696406 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacagg 37696357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 220 - 404
Target Start/End: Complemental strand, 37594294 - 37594110
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || ||||||| || |||| | |||||||  | |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37594294 ctcttaaactcatggaatgagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37594195  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| || |||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37594194 tctcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37594110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 220 - 404
Target Start/End: Complemental strand, 37696685 - 37696501
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||   ||||||   |||||| ||    
T  37696685 ctcttaaactcatggaaggacattcaggacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctagcattggatacttttcac 37696586  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| ||||||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37696585 tctcaaacaacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37696501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 404
Target Start/End: Complemental strand, 37711415 - 37711275
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37711415 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37711316  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
     |||| || |||||| |||||||| |||| |||||||||||    
T  37711315 aatgccagttccctttatgtgctcgatttggctcacaacaa 37711275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 413
Target Start/End: Complemental strand, 37639657 - 37639508
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37639657 caacaactttcaaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37639558  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
     |||| || |||||| || ||||| |||| ||||||||||| || |||||    
T  37639557 aatgccagttccctttatatgctcgatttggctcacaacaatttgacagg 37639508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 413
Target Start/End: Complemental strand, 37702638 - 37702445
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| || ||||||||||||||   |||||| | || |||| ||| | |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37702638 ctcttaaactcatggaaggacattatacacattaacctgagtttcaaaatgttgcaaggacatcttccaattccacctcatggcattgtacactttttac 37702539  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
    |||| ||||||||||||||||||   || ||||||||||| ||| ||||||| |||||| |  | |||||||| ||||||||||| || |||||    
T  37702538 tctcaaacaacaacttcacaggaaatatctcttcaacattctgcaatgcaagttccctttacattctcaatttggctcacaacaatttgacagg 37702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 37413452 - 37413526
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattcca 294  Q
    |||||||||||||||| ||| ||| | || || ||||| |||| |||||||||||||||||||||||||||||||    
T  37413452 ctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttccaattcca 37413526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 6273342 - 6273241
Alignment:
Q  108 tttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||||||||    |||||||  |||||||  |||| || ||||| |||||  | ||||||||||||||||| |||||||||| |||||||||||    
T  6273342 tttagtttttaagtgtctgagtcattcattcaatccgatttaatctggttcaatacatataaaaatttaatcttaaggccgagtcatctaaccgagttat 6273243  T
Q  208 tc 209  Q
    ||    
T  6273242 tc 6273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 14351830 - 14351926
Alignment:
Q  111 agtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    ||||||||||||||  ||||||| |||||| |  |||| ||  | ||||||||| | ||||||||||||||||||||| |||||  |||||||||||    
T  14351830 agtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagttat 14351926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 17644142 - 17644194
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  17644142 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 17644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 32383804 - 32383878
Alignment:
Q  135 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    ||||||||  |||| || || ||||||||| | |||||||||||||| |||||| ||||||  ||||||||||||    
T  32383804 gttcaatctgatttaatctgattaaatacctataaaaatttaatcttgagaccgggtcatcttaccgagttattc 32383878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 18942416 - 18942364
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||| |||||||    
T  18942416 gttaaatacctataaatatttaatcttaagaccgagtcatttaactgagttat 18942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 35456674 - 35456622
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||| | ||| |||||||||||||||| ||||||  |||||||||||    
T  35456674 gttaaatacctataaatatttaatcttaagaccaagtcatttaaccgagttat 35456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 404
Target Start/End: Original strand, 16843066 - 16843250
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||| |||||||||| ||||||||| |||||||||| |||| |||||| |||||||||||  ||||||||||| |||  ||| || |  ||||||  |    
T  16843066 ctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggccttcaatacttttcgc 16843165  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 404  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| ||||||| | | | ||||| |||||||| |||||||||||    
T  16843166 tctcaaacaacaacttcacaggagacatttcttcaacattctgcaatgcaagtttcttgaatgttctcaatttggctcacaacaa 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 43245591 - 43245705
Alignment:
Q  93 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 192  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  43245591 atatacatattgcattttagtttttaagtgatga-gtcattagttcaattaaatttaatttggttaaataccaataacaatttaatattaagaccgagtc 43245689  T
Q  193 atccaaccgagttatt 208  Q
    ||   |||||||||||    
T  43245690 atatgaccgagttatt 43245705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 13428667 - 13428764
Alignment:
Q  93 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 191  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||    
T  13428667 atatacatattacattttagtttttaagtg-tcgagtcattagttcaatcaaatttaatttggttgaatatcaataaaaatttaatattaagaccgagt 13428764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 413
Target Start/End: Original strand, 16843245 - 16843394
Alignment:
Q  264 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 363  Q
    |||||| || ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||| |||    
T  16843245 caacaattttcaaggagatcttccaattccacctgatggcattgtatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgc 16843344  T
Q  364 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
     |||||||  |||||||| |||| ||||| ||||||||||| || |||||    
T  16843345 aatgcaagtacccttaatttgcttaatttggctcacaacaatttgacagg 16843394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 413
Target Start/End: Original strand, 24217936 - 24218129
Alignment:
Q  220 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 319  Q
    |||||||||||||||||||| ||| |    ||| |||| |||| |||||||||||||||||| ||||| |||||| | |  || ||| |  |||||| ||    
T  24217936 ctcttacacacatggaaggaaattcgaattattaatctcagtttcaacaagttgcaaggagaccttccgattccaccctatggaattcaatacttttcac 24218035  T
Q  320 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacagg 413  Q
    |||| ||||||||||||||||||| |||| |||   || ||||| ||||||| ||||| ||| |||||||||| ||| ||||||| ||||||||    
T  24218036 tctcaaacaacaacttcacaggagacattgctttgtcactgtgcaatgcaagttccctgaatttgctcaatttggctaacaacaatttaacagg 24218129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 409
Target Start/End: Original strand, 16845877 - 16846054
Alignment:
Q  232 tggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaaca 331  Q
    |||||||||||| | |||||||| || |||| |||||| |||||||||||  |||||||||||  ||  |||||| |  ||||||| ||||| |||||||    
T  16845877 tggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattccatattatggcattaaatactttttgctctcaaacaaca 16845976  T
Q  332 acttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaa 409  Q
    ||||||||| ||  || ||||| ||||| |||  |||||| | ||| | ||| |||||||| ||||||||||| ||||    
T  16845977 acttcacagaagatatgtcttccacattctgcagtgcaagtttcctgattgttctcaatttggctcacaacaatttaa 16846054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 10006678 - 10006742
Alignment:
Q  150 atttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattctattt 214  Q
    |||||||| |||||| | |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  10006678 atttggtttaatacctataaaaatttaatcttaagaccaattcatctaaccgagttattcgattt 10006742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 13428627 - 13428671
Alignment:
Q  23 cacactctttaaacaataatatatagctatacaaatattaatata 67  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  13428627 cacactctttaaacaattatatatagctacacaaatattaatata 13428671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 43245566 - 43245595
Alignment:
Q  38 ataatatatagctatacaaatattaatata 67  Q
    ||||||||||||||||||||||||||||||    
T  43245566 ataatatatagctatacaaatattaatata 43245595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 4414582 - 4414530
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  4414582 gttaaatacctataaatatttaatcttaagaccgagtcatttaatcgagttat 4414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 26403518 - 26403632
Alignment:
Q  93 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 192  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||       ||||||||||| ||||||| ||||||| |||| ||||    
T  26403518 atatacatattacattttagtttttaagtggtcgagtcattagttgactcaaattt-------ttaaataccaataaaaattgaatcttacgaccaagtc 26403610  T
Q  193 atccaaccgagttattctattt 214  Q
    |||  |||||||||||||||||    
T  26403611 atctgaccgagttattctattt 26403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 28761630 - 28761669
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28761630 aaaaatttaatcttaagaccgagtcacctaaccgagttat 28761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 38712111 - 38712212
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||| ||| |  |||||||||    
T  38712111 ttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatcgtaagaccgaatcaacttaccgagtta 38712210  T
Q  207 tt 208  Q
    ||    
T  38712211 tt 38712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 32493073 - 32493157
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 191  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| |||||||||||    
T  32493073 ttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagt 32493157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 4816 - 4917
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4816 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4915  T
Q  207 tt 208  Q
    ||    
T  4916 tt 4917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 4836 - 4937
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4836 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4935  T
Q  207 tt 208  Q
    ||    
T  4936 tt 4937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 3794355 - 3794258
Alignment:
Q  112 gtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    |||||||||| ||  |||||| |||||||||  |||| || || ||||||||| | |||||||||||||||||| || |||||| |||||||||||||    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattc 3794258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 3014060 - 3014162
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    ||||||||||||||| ||  |||||   ||||||||  |||| || | |||||||||| | ||||||||||||||||||||| |||||  ||||||||||    
T  3014060 ttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtta 3014159  T
Q  207 ttc 209  Q
    |||    
T  3014160 ttc 3014162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 32364298 - 32364236
Alignment:
Q  145 attttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||| |||||||||||    
T  32364298 atttaatttggttaaatagttataaaaatttaatcttaagaccgagtcatctaaccgagttat 32364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 24638914 - 24638812
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||||||| |  |||||||||    
T  24638914 ttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtta 24638815  T
Q  207 ttc 209  Q
    |||    
T  24638814 ttc 24638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 44410927 - 44410825
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||| ||||||||||||   ||||||| ||||||||  |||| ||  |||||| |||| | ||| |||||||||||| ||||||||||| | ||||||||    
T  44410927 tttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtta 44410828  T
Q  207 ttc 209  Q
    |||    
T  44410827 ttc 44410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 40960100 - 40960207
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 206  Q
    |||||||||||||||  | |||||||  ||||||||  || | |  |||||||||||| | ||||| |||||||||||| || |||||  ||||||||||    
T  40960100 ttttagtttttaagtaatcaagtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatcttaagatcgggtcatgtaaccgagtta 40960199  T
Q  207 ttctattt 214  Q
    ||| ||||    
T  40960200 ttcaattt 40960207  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 35331793 - 35331681
Alignment:
Q  93 atatacatattacattttagtttttaagtggtaaagt-cattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 191  Q
    ||||||||||||||||||||||| ||||||   | |  ||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||  ||||    
T  35331793 atatacatattacattttagtttctaagtgtcgacggacattaattcaatcaaatttaatttggttaaatcttaataaaaatttaatcttaagatggagt 35331694  T
Q  192 catccaaccgagt 204  Q
    |||  ||||||||    
T  35331693 catttaaccgagt 35331681  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 31813676 - 31813601
Alignment:
Q  134 agttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    ||||||||| ||||| || |||||||||||| | |||||||||| ||||||||||  ||||| |||||||||||||    
T  31813676 agttcaatccaatttaatatggttaaatacctataaaaatttaaccttaagaccggatcatctaaccgagttattc 31813601  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 5419080 - 5419006
Alignment:
Q  135 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    |||||||| ||| | || |||||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||    
T  5419080 gttcaatccaatctaatctggttaaatacctataaaaatttaatcttaagacagggtcatacaaccgagttattc 5419006  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 46170795 - 46170754
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  46170795 aaaaatttaatcttaaggccgagtcatctaaccgagttattc 46170754  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 35331829 - 35331796
Alignment:
Q  13 aaaatatagtcacactctttaaacaataatatat 46  Q
    ||||||||| ||||||||||||||||||||||||    
T  35331829 aaaatatagccacactctttaaacaataatatat 35331796  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 208
Target Start/End: Complemental strand, 33610744 - 33610704
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttatt 208  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  33610744 aaaaatttaatcttaaaaacgagtcatctaaccgagttatt 33610704  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 51537138 - 51537177
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  51537138 aaaaatttaatcttaagaccgagtcatctaaccgagttat 51537177  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 29727904 - 29727852
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||||||    
T  29727904 gttaaatagctataaaaatttaatcttaagaccgagtcatctaactgagttat 29727852  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 35054597 - 35054683
Alignment:
Q  107 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtca 193  Q
    |||||||||||||||||    |||||  |||||||| ||||| || | |||||||||  | |||||||||||| |||||||||||||    
T  35054597 ttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtca 35054683  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 6065401 - 6065501
Alignment:
Q  109 ttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttatt 208  Q
    |||||||||||||||   ||||||  ||||||||  |||| || || ||||||||| | ||||| ||| ||||||| || ||||||| ||||||||||||    
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  209 c 209  Q
    |    
T  6065501 c 6065501  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 16106651 - 16106703
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||| | | |||||||||||||||||| ||||||||| |||||||||||    
T  16106651 gttaaatagctataaaaatttaatcttaagatcgagtcatctaaccgagttat 16106703  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 21800619 - 21800671
Alignment:
Q  155 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  21800619 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 21800671  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 10810507 - 10810548
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  10810507 aaaaatttaatcttacgaccgggtcatacaaccgagttattc 10810548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 26606717 - 26606644
Alignment:
Q  136 ttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 209  Q
    ||||||| ||| | || ||||| |||||| | ||||||||||||||||||  | |||||| |||||||||||||    
T  26606717 ttcaatccaatctaatctggttcaatacctataaaaatttaatcttaagattgggtcatctaaccgagttattc 26606644  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 29419718 - 29419757
Alignment:
Q  168 aaaaatttaatcttaagaccgagtcatccaaccgagttat 207  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  29419718 aaaaatttaatcttaagaccgagtcacctaaccgagttat 29419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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