View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_13 (Length: 371)
Name: NF6290_low_13
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 40325501 - 40325845
Alignment:
| Q |
13 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325501 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
40325600 |
T |
|
| Q |
113 |
agcctcctagctattccctgtttacatgaatcaatagttgtcacaaaagagcttttgaataagaaaaataaaacatccttgaattttgacagaaacgaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325601 |
agcctcctagctattccctgtttacatgaatcaatagttgtcacaaaagagcttttgaataagaaaaataaaacatccttgaattttgacagaaacgaag |
40325700 |
T |
|
| Q |
213 |
cttacattgcgtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325701 |
cttacattgcgtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcag |
40325800 |
T |
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| Q |
313 |
gttggattttatgaactgatattgatggctcactactgagaattg |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325801 |
gttggattttatgaactgatattgatggctcactactgagaattg |
40325845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 30894528 - 30894452
Alignment:
| Q |
56 |
aggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcacaagcctcctagctattccctg |
132 |
Q |
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|||||||| |||| ||||||| |||||| || ||||||| |||||| | ||||||||||| ||| || |||||||| |
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| T |
30894528 |
aggtctgaatatctcatttctctcttctttgccgcttcttgaagtgcagatttcacaagccgccttgcaattccctg |
30894452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 357
Target Start/End: Original strand, 28938408 - 28938542
Alignment:
| Q |
223 |
gtggattgttgctaacgatattcacagctacttggttgctaagatgctcccataaaccatcagaagcaaagatgagaaattgatcttcaggttggatttt |
322 |
Q |
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||||||||||||| || || || ||||| ||||||||||||| ||||||||||| ||||| |||||||| ||||||||||| || ||||| || | ||| |
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| T |
28938408 |
gtggattgttgctgactatgttaacagcctcttggttgctaagctgctcccataatccatccgaagcaaatatgagaaattggtcatcaggatgaagttt |
28938507 |
T |
|
| Q |
323 |
atgaactgatattgatggctcactactgagaattg |
357 |
Q |
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||| ||| ||||||||||||| |||||||||| |
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| T |
28938508 |
atgtgttgaaattgatggctcacagctgagaattg |
28938542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 28937860 - 28937981
Alignment:
| Q |
13 |
atcatcatggaagtgtctcctcactccttgttcgatcttttggaggtctgataatcttatttctcgcttcttagctgcttctttaagtgctgctttcaca |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||||||| || ||| || |||| ||| | ||||||||| ||||||||||||||||| |
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| T |
28937860 |
atcatcatggaagtgtctccttgttccttgttcaatcttttgaaggtctgctagtctcatctctcttttccttgctgcttctctaagtgctgctttcaca |
28937959 |
T |
|
| Q |
113 |
agcctcctagctattccctgtt |
134 |
Q |
| |
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|| || || || |||||||||| |
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| T |
28937960 |
agtcttcttgcaattccctgtt |
28937981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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