View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_14 (Length: 360)

Name: NF6290_low_14
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_14
NF6290_low_14
[»] chr2 (3 HSPs)
chr2 (26-183)||(3537421-3537579)
chr2 (188-335)||(24489043-24489190)
chr2 (184-337)||(32983635-32983788)
[»] chr8 (4 HSPs)
chr8 (187-320)||(8789527-8789660)
chr8 (249-334)||(21519149-21519234)
chr8 (183-304)||(21519279-21519399)
chr8 (188-228)||(27084504-27084544)
[»] chr3 (3 HSPs)
chr3 (184-291)||(38639900-38640007)
chr3 (181-336)||(36432971-36433126)
chr3 (183-228)||(29438249-29438294)
[»] chr5 (6 HSPs)
chr5 (183-304)||(9991661-9991782)
chr5 (184-319)||(34731551-34731695)
chr5 (184-291)||(36560502-36560609)
chr5 (188-229)||(15974189-15974230)
chr5 (188-228)||(18768414-18768454)
chr5 (188-228)||(28866480-28866520)
[»] chr4 (3 HSPs)
chr4 (183-283)||(54028833-54028933)
chr4 (188-228)||(29096101-29096141)
chr4 (188-228)||(37987239-37987279)
[»] chr6 (2 HSPs)
chr6 (184-304)||(33582512-33582632)
chr6 (184-228)||(14533475-14533519)
[»] scaffold0006 (1 HSPs)
scaffold0006 (184-242)||(148325-148383)
[»] chr1 (2 HSPs)
chr1 (184-242)||(13658564-13658622)
chr1 (216-336)||(42138805-42138926)
[»] chr7 (4 HSPs)
chr7 (214-298)||(47535171-47535255)
chr7 (203-301)||(28756068-28756166)
chr7 (184-228)||(19362396-19362440)
chr7 (217-301)||(37127593-37127676)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 3537579 - 3537421
Alignment:
Q  26 aatgttcacggttaattagttgttctgccacttattacatctctaataatctcgcacataacaacaactgcagaaccgttcaaatttaattaaccaattt 125  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  3537579 aatgttcacggttaattagttgttccgtcacttattacatctctaataatctcgcacataacaacaactgcaaaacagttcaaatttaattaaccaattt 3537480  T
Q  126 aaaacggttttgcaacagttgc-atgtgctacatgcatcgatagagggattcaaacatg 183  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  3537479 aaaacggttttgcaactgttacaatgtgctacatgcatcgatagagggattcaaacatg 3537421  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 335
Target Start/End: Original strand, 24489043 - 24489190
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgta 287  Q
    |||||||||  ||| || |||| ||| |||||| |||||||  || ||||||||| || | ||||||||||| | ||||||||| |||| ||||||||||    
T  24489043 ggcggatcttctcatggacaggtaggggccatgacatcccccaaatttactatatgtatagtattatgcctatatatacaacaaattcttagtggttgta 24489142  T
Q  288 gtgggaagggggtgccttgatatactgaaggtcgtgtgttcgaccctt 335  Q
    ||||||||||||||| ||  ||| |  |||||||||||||||||||||    
T  24489143 gtgggaagggggtgcttttttatgccaaaggtcgtgtgttcgaccctt 24489190  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 337
Target Start/End: Complemental strand, 32983788 - 32983635
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 283  Q
    |||||| ||||||  ||| ||||||| ||||| ||||||| |||||||| ||||||||| || | ||||||| | | || | ||| || || | ||||||    
T  32983788 caggggtggatcttctcaagggcaggaaggtgtcatggcaacccctgaacttactatatttatagtattatgtccatactttcaataaatttttagtggt 32983689  T
Q  284 tgtagtgggaagggggtgccttgatatactgaaggtcgtgtgttcgaccctttt 337  Q
    || ||||| ||||||||||||  ||||| |||||||||  |||||| |||||||    
T  32983688 tgcagtggtaagggggtgcctctatataatgaaggtcgcatgttcgcccctttt 32983635  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 187 - 320
Target Start/End: Original strand, 8789527 - 8789660
Alignment:
Q  187 gggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgt 286  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||     
T  8789527 gggcggatctcttcaggggcaggcaagtgccatgacatcccctgaagttactatatatacactattatgcttaaatgtacaataacttctcagtggttgc 8789626  T
Q  287 agtgggaagggggtgccttgatatactgaaggtc 320  Q
    ||||| ||||||||||||||||||||||||||||    
T  8789627 agtggtaagggggtgccttgatatactgaaggtc 8789660  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 21519149 - 21519234
Alignment:
Q  249 tattatgcctaaacatacaacaacttctcagtggttgtagtgggaagggggtgccttgatatactgaaggtcgtgtgttcgaccct 334  Q
    ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||   ||| |  ||||||||||||||||||||    
T  21519149 tattatgcctaaacatacaacaaattcttagtggttgcagtgggaagggggtgcctcagtatgcctaaggtcgtgtgttcgaccct 21519234  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 21519279 - 21519399
Alignment:
Q  183 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 282  Q
    ||||||||||||||  ||| || |||||||| | ||||||||||||  || ||||||||| || | |||||| ||||||||||||| || |||| |||||    
T  21519279 gcaggggcggatcttctcaaggacaggcaggggtcatggcatcccccaaatttactatatgtatagtattatacctaaacatacaataaattcttagtgg 21519378  T
Q  283 ttgtagtgggaagggggtgcct 304  Q
    ||||||| ||||||||||||||    
T  21519379 ttgtagt-ggaagggggtgcct 21519399  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 27084544 - 27084504
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  27084544 ggcggatctctttgggggaaggcaggtgccatggcatcccc 27084504  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 38639900 - 38640007
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  38639900 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaatgtacaacaacttctcaatggt 38639999  T
Q  284 tgtagtgg 291  Q
    || |||||    
T  38640000 tgcagtgg 38640007  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 336
Target Start/End: Complemental strand, 36433126 - 36432971
Alignment:
Q  181 atgcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagt 280  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||| |||||| ||||||||| || |  |||||||| | || ||||  || |||||| |    
T  36433126 atgcaggggcagatcttctcaagggcaggcaggtgccatggcatcacctgaatttactatatttatagcattatgcccatacttacagtaaattctcaat 36433027  T
Q  281 ggttgtagtgggaagggggtgccttgatatactgaaggtcgtgtgttcgacccttt 336  Q
    ||||| ||||| || |||||||||  ||||  |||||||||  |||| ||||||||    
T  36433026 ggttgcagtggtaaaggggtgcctctatatggtgaaggtcgcatgtttgacccttt 36432971  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 29438249 - 29438294
Alignment:
Q  183 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  29438249 gcaggggcggatctctttgggggcaggcaggtgccatggtatcccc 29438294  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 9991661 - 9991782
Alignment:
Q  183 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 282  Q
    ||||||||||||||  ||  ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| | |  ||||| || ||||||||||    
T  9991661 gcaggggcggatcttctctagggcaggcaagtgccatggcatcccctgaatttactatatatacagtattatgcccatatttacaataaattctcagtgg 9991760  T
Q  283 ttgtagtgggaagggggtgcct 304  Q
    ||||||||| || |||||||||    
T  9991761 ttgtagtggaaaaggggtgcct 9991782  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 319
Target Start/End: Original strand, 34731551 - 34731695
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttac---------tatatatacactattatgcctaaacatacaacaactt 274  Q
    |||||||||||||||||||||||| |||||||||| | |||||||| |||||||         |||||||| ||||||||| ||||| |||||| |||||    
T  34731551 caggggcggatctcttcaggggcatgcaggtgccaggacatcccctaaagttacgttactatatatatatatactattatgtctaaatatacaataactt 34731650  T
Q  275 ctcagtggttgtagtgggaagggggtgccttgatatactgaaggt 319  Q
    || || ||||| ||||| ||| ||||| |||||||||||||||||    
T  34731651 cttaggggttgcagtggaaagagggtgtcttgatatactgaaggt 34731695  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 36560502 - 36560609
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 283  Q
    ||||||| |||||  ||| |||||| |||||| |||||||||||||||| |||||||||  | |  |||||||| | || || || || |||||||||||    
T  36560502 caggggcagatcttctcaagggcagacaggtgtcatggcatcccctgaatttactatattgatagcattatgcccatacttataataaattctcagtggt 36560601  T
Q  284 tgtagtgg 291  Q
    ||||||||    
T  36560602 tgtagtgg 36560609  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 15974230 - 15974189
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccct 229  Q
    |||||||||  | |||||||||||||||||||||||||||||    
T  15974230 ggcggatcttctaaggggcaggcaggtgccatggcatcccct 15974189  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 18768454 - 18768414
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  18768454 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 18768414  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 28866520 - 28866480
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  28866520 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 28866480  T

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Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 54028833 - 54028933
Alignment:
Q  183 gcaggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtgg 282  Q
    ||||||||||||||||||| |||||| ||||||||||| |||||   ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||||    
T  54028833 gcaggggcggatctcttcaagggcagacaggtgccatgacatccttcgaagttactatttatatactattatgcctaaatatacaacaacttctcggtgg 54028932  T
Q  283 t 283  Q
    |    
T  54028933 t 54028933  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 29096101 - 29096141
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  29096101 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 29096141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 37987279 - 37987239
Alignment:
Q  188 ggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  37987279 ggcggatcttctaaggggcaggcaggtgccatggcatcccc 37987239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 304
Target Start/End: Original strand, 33582512 - 33582632
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggt 283  Q
    |||||||||||||  ||| ||||||||||||||||||||||||||| || ||||||||| || | ||||||||| | || | ||| || |||||||||||    
T  33582512 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctaaacttactatatttatagtattatgcccatactttcaataaattctcagtggt 33582611  T
Q  284 tgtagtgggaagggggtgcct 304  Q
    || ||||| ||||||||||||    
T  33582612 tgcagtggtaagggggtgcct 33582632  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 14533475 - 14533519
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  14533475 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 14533519  T

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Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 148383 - 148325
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 242  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  148383 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 148325  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 13658622 - 13658564
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat 242  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||    
T  13658622 caggggcggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatat 13658564  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 336
Target Start/End: Complemental strand, 42138926 - 42138805
Alignment:
Q  216 ccatggcatcccctgaagttactatatatacact--attatgcctaaacatacaacaacttctcagtggttgtagtgggaagggggtgccttgatatact 313  Q
    |||||||||||||  || |||||||||||| |    |||||||||||||||||||||| |||| ||||| || ||| |||| ||||||||||  ||| |     
T  42138926 ccatggcatcccccaaatttactatatatatatagcattatgcctaaacatacaacaaattcttagtggatgcagt-ggaaaggggtgccttagtatgcc 42138828  T
Q  314 gaaggtcgtgtgttcgacccttt 336  Q
     |||||||||  |||||||||||    
T  42138827 taaggtcgtgcattcgacccttt 42138805  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 47535171 - 47535255
Alignment:
Q  214 tgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtgggaagggg 298  Q
    |||||||||||||||   | ||||||||| || | ||||||||||||||||||||||| |||| |||||| ||||||| ||||||    
T  47535171 tgccatggcatcccccagatttactatatgtatagtattatgcctaaacatacaacaaattcttagtggtagtagtggaaagggg 47535255  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 301
Target Start/End: Complemental strand, 28756166 - 28756068
Alignment:
Q  203 gggcaggcaggtgccatggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtgggaagggggtg 301  Q
    ||||||||||||||||||||||||| |||| ||||||||| || |  |||||||| | |  ||||| || |||| |||||||| ||||| |||||||||    
T  28756166 gggcaggcaggtgccatggcatcccttgaatttactatatttatagcattatgcccataattacaataaattcttagtggttgcagtggtaagggggtg 28756068  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 19362396 - 19362440
Alignment:
Q  184 caggggcggatctcttcaggggcaggcaggtgccatggcatcccc 228  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||    
T  19362396 caggggcggatctctttgggggcaggcaggtgccatggtatcccc 19362440  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 37127676 - 37127593
Alignment:
Q  217 catggcatcccctgaagttactatatatacactattatgcctaaacatacaacaacttctcagtggttgtagtgggaagggggtg 301  Q
    ||||||||||| | || |||||||||||| | ||||||||||| | || ||| || |||| |||||||| ||||| |||||||||    
T  37127676 catggcatccc-taaatttactatatatatagtattatgcctatatattcaataaattcttagtggttgcagtggaaagggggtg 37127593  T

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