View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_17 (Length: 346)

Name: NF6290_low_17
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_17
NF6290_low_17
[»] chr3 (3 HSPs)
chr3 (169-326)||(2782514-2782671)
chr3 (5-79)||(2782350-2782424)
chr3 (258-333)||(18973104-18973179)
[»] chr2 (1 HSPs)
chr2 (177-333)||(42048555-42048711)
[»] chr8 (2 HSPs)
chr8 (171-333)||(31180275-31180436)
chr8 (258-333)||(40530939-40531014)
[»] chr1 (1 HSPs)
chr1 (297-333)||(38564608-38564644)
[»] chr7 (1 HSPs)
chr7 (286-321)||(26231849-26231884)
[»] chr6 (1 HSPs)
chr6 (297-333)||(12128601-12128637)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 169 - 326
Target Start/End: Original strand, 2782514 - 2782671
Alignment:
Q  169 acgcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtct 268  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||| ||    
T  2782514 acgcaccccaacaacaccactagagatccacagaaaccacacgcaaacacccgaagcacagcgatctcgtaccaacagcaagctacttaatgtaccgcct 2782613  T
Q  269 ttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgca 326  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  2782614 ttcatcgtaaaggagataaaccaccaaccatctaaagactggatccaccacaattgca 2782671  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 2782350 - 2782424
Alignment:
Q  5 caagacagcaaaacaacatcaccaatccctacaaacaaaccctagaacgcgtagggaaaacatccaaaggccata 79  Q
    ||||||| || |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2782350 caagacaacataacatcatcaccaatccctacaaacaaaccccataacgcgtagggaaaacatccaaaggccata 2782424  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 18973179 - 18973104
Alignment:
Q  258 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccct 333  Q
    |||||||||||||| |||   |||||| ||| | | || |||||| |||||||||||||||||| |||||||||||    
T  18973179 atgtaccgtctttcttcgcggaggagaaaaatctcaaatcatccaaagactggatccaccacaactgcacgaccct 18973104  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 333
Target Start/End: Original strand, 42048555 - 42048711
Alignment:
Q  177 caacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtctttcatcgt 276  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||| | |||||  || ||||||  |||| |||| |||||   ||||| ||||||||||     
T  42048555 caacaacaccaccagagatccatataaaccacacgcgaacacccaacgcacaacgaccccgtacaaacaacaagatacttaccgtaccatctttcatcgc 42048654  T
Q  277 aaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccct 333  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  42048655 gaaggagataaaccaccaaccatccagagactggatccaccacaactgcaagaccct 42048711  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 31180275 - 31180436
Alignment:
Q  171 gcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtcttt 270  Q
    ||||| || ||||| ||||| |||| |||| |||| || ||||||||||  ||||||| | |||||  | ||||| ||||||||||  |||||| |||||    
T  31180275 gcaccacaccaacaccaccaaagattcacataaac-actcgcaaacacctaaagcacaattatcccaaaccaacaacaagctacttattgtaccttcttt 31180373  T
Q  271 catcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccct 333  Q
    |  ||  ||||||| | ||||||||||||||| |||||| ||||||||||| |||||||||||    
T  31180374 cggcgcgaaggagagacaccaccaaccatccaaagactgaatccaccacaactgcacgaccct 31180436  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 40531014 - 40530939
Alignment:
Q  258 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccct 333  Q
    |||||||||||||| |||  ||||||| ||| | | || ||||||| ||||||||||||||||| |||||||||||    
T  40531014 atgtaccgtctttcttcgcgaaggagaaaaatctcaaatcatccagggactggatccaccacaactgcacgaccct 40530939  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 38564644 - 38564608
Alignment:
Q  297 catccagagactggatccaccacaattgcacgaccct 333  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38564644 catccagagactggatccaccacaactgcacgaccct 38564608  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 26231884 - 26231849
Alignment:
Q  286 aaaccaccaaccatccagagactggatccaccacaa 321  Q
    ||||||||||||||||||| ||||||||||||||||    
T  26231884 aaaccaccaaccatccagaaactggatccaccacaa 26231849  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 12128637 - 12128601
Alignment:
Q  297 catccagagactggatccaccacaattgcacgaccct 333  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  12128637 catccagagactggatccaccacaactgcacggccct 12128601  T

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