View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_2 (Length: 693)
Name: NF6290_low_2
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 604; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 18 - 683
Target Start/End: Original strand, 25564752 - 25565413
Alignment:
| Q |
18 |
ttaaataccactttggtcccttaacttatgtaaattgaggcaacttggtccctcaatagatggatatgataatatgctttcataagttaagggaccaagt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25564752 |
ttaaataccactttggtcccttaacttatgtaaattgaggcaacttggtccctcaatagatggatatgataatatgttttcataagttaagggaccaagt |
25564851 |
T |
|
| Q |
118 |
tattttaacttgcataattaagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaatgagttaagggaccaaagaggtattta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25564852 |
tattttaacttgcataattaagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaatgagttaagggaccaaagaggtattta |
25564951 |
T |
|
| Q |
218 |
agccttaataaaattatttgctgttcaaaaaataaaataaattatgtgccacaataaaacttgttgctcattccaaatatttccgtatccctgtatctat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25564952 |
agccttaataaaattatttgctgttcaaaaaataaaataaaatatgtgccacaataaaacttcttgctcattccaaatatttccgtatccctgtatctat |
25565051 |
T |
|
| Q |
318 |
gtcgtatcgtactatgtatccgggcttgttagtttgttttgcatcttcataggtgttttagaatgctgcagtgatcaaatcatgtttttcttttacgttc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565052 |
gtcgtatcgtactatgtatccgggcttgttagtttgttttgcatcttcataggtgttttagaatgctgcagtgatcaaatcatgtttttcttttacgttc |
25565151 |
T |
|
| Q |
418 |
tttttacccttttaattatttgttgccattacatcgtatgtaccacnnnnnnncttgtcactcgttccattgcttctcttcaccacccagggcttgggat |
517 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
25565152 |
tttttacccttttaattatttgttgccattacatcgtatgtaccacaaaaaaacttgtcactcgt----ttgcttctcttgaccacccagggcttgggat |
25565247 |
T |
|
| Q |
518 |
tatacacaccgccgggtaatttttgctctgtttagcgtgtacactgttgctgagttgttgctgtatttggttcatctgcttcactgttctgtttcacaca |
617 |
Q |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565248 |
tatacacaccgctgggtaatttttgctctgtttagtgtgtacactgttgctgagttgttgctgtatttggttcatctgcttcactgttctgtttcacaca |
25565347 |
T |
|
| Q |
618 |
ttttctgcatgtccttattttattgctcatgctcccttttagggcttactctttagtccatctgtg |
683 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25565348 |
ttttctgcatgtccttattttattgctcatgctcccttttagggcttactctttagtccatctgtg |
25565413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 25565612 - 25565724
Alignment:
| Q |
295 |
tatttccgtatccctgtatctatgtcgtatcgtactatgt--------atccgggcttgttagtttgttttgcatcttcataggtgttttagaatgctgc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||| |||||||||||||| || |||||||||||| | |
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| T |
25565612 |
tatttccgtatccctgtatctatgtcgtatcgtactatgtaatcgaccaactgggcttcttagtttgctttgcatcttcataagtattttagaatgctac |
25565711 |
T |
|
| Q |
387 |
agtgatcaaatca |
399 |
Q |
| |
|
| ||||||||||| |
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|
| T |
25565712 |
actgatcaaatca |
25565724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 10069915 - 10069961
Alignment:
| Q |
174 |
aaattgaacttttaaaatgagttaagggaccaaagaggtatttaagc |
220 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||| | ||||||||| |
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|
| T |
10069915 |
aaattgaacttttaaattaagttaagggaccaaagtgttatttaagc |
10069961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 10069828 - 10069739
Alignment:
| Q |
29 |
tttggtcccttaacttatgtaaattgaggcaacttggtccctcaatagatggatatgataatatgctttcataagttaagggaccaagtt |
118 |
Q |
| |
|
||||||| ||||||||||| || || |||||||||| || ||| |||| | |||||||||| ||| |||||||||||||||||||| |
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|
| T |
10069828 |
tttggtctcttaacttatgcaatttagtgcaacttggtttcttaatcgatgaaaatgataatatttttttataagttaagggaccaagtt |
10069739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 47584294 - 47584434
Alignment:
| Q |
30 |
ttggtcccttaacttatgtaaattgaggcaacttggtccctcaatagatggatatgataatatgctttcataagttaagggaccaagttattttaacttg |
129 |
Q |
| |
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||||| ||||||||| ||||| | | | |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||| || ||| |
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| T |
47584294 |
ttggttccttaacttgtgtaagctaatgaaacttggttgctcaatagatggatatgatagtatattttcataagttaaggaaccaagttgccagaaattg |
47584393 |
T |
|
| Q |
130 |
cat-aattaagggaccaaattggtcagttttgaagtaaagg |
169 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| |||| |||| |
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| T |
47584394 |
cataaattaagggaccaaattggtcggttttaaagttaagg |
47584434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 55488172 - 55488050
Alignment:
| Q |
99 |
ataagttaagggaccaagttattttaacttgcataa-ttaagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaatgagtta |
197 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||| |||||||||||||||| || ||| | ||| ||| || ||| ||||||||| |||| ||||| |
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| T |
55488172 |
ataagttaatggaccaagttgcattaactaacataagttaagggaccaaattgatcggttctacagttaagagaccaaactgaactttttaaataagtta |
55488073 |
T |
|
| Q |
198 |
agggaccaaagaggtatttaagc |
220 |
Q |
| |
|
|||| ||||||||||||||||| |
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|
| T |
55488072 |
cgggatcaaagaggtatttaagc |
55488050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 55488269 - 55488301
Alignment:
| Q |
193 |
agttaagggaccaaagaggtatttaagccttaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
55488269 |
agttaagggaccaaagaggtatttaacccttaa |
55488301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 26729009 - 26729095
Alignment:
| Q |
135 |
ttaagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaatgagttaagggaccaaagaggtatttaagcc |
221 |
Q |
| |
|
|||| ||| ||||||| || ||||| |||| ||| || || ||||| ||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
26729009 |
ttaaaggatcaaattgatcggttttaaagttaagagagtaagttgaaattttaaaataagttaagggaccaaagtggtatttaagcc |
26729095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 26728951 - 26729021
Alignment:
| Q |
137 |
aagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaatgagttaagggaccaaa |
207 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||| ||| | |||||||||||| |||||| ||| |||| |
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|
| T |
26728951 |
aagggatcaaattggtcagttttaaagttaagggactaaactaaacttttaaaataagttaaaggatcaaa |
26729021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 26729092 - 26729064
Alignment:
| Q |
18 |
ttaaataccactttggtcccttaacttat |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
26729092 |
ttaaataccactttggtcccttaacttat |
26729064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 730282 - 730343
Alignment:
| Q |
29 |
tttggtcccttaacttatgtaaattgaggcaacttggtccctcaatagatggatatgataat |
90 |
Q |
| |
|
|||| ||||||||||||||||| || | ||| |||||||||||||||||||||| |||||| |
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|
| T |
730282 |
tttgatcccttaacttatgtaagttaatacaatttggtccctcaatagatggatacgataat |
730343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 37762616 - 37762677
Alignment:
| Q |
57 |
gcaacttggtccctcaatagatggatatgataatatgctttcataagttaagggaccaagtt |
118 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||| ||||||||||||| |||| ||||| |
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|
| T |
37762616 |
gcaactttgtctctcaatagatgaatatgataatatattttcataagttaaaggactaagtt |
37762677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 14780205 - 14780245
Alignment:
| Q |
180 |
aacttttaaaatgagttaagggaccaaagaggtatttaagc |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||| | ||||||||| |
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|
| T |
14780205 |
aacttttaaaataagttaagggaccaaagtgttatttaagc |
14780245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 5001971 - 5001915
Alignment:
| Q |
135 |
ttaagggaccaaattggtcagttttgaagtaaagggatgaaattgaacttttaaaat |
191 |
Q |
| |
|
|||| |||| ||||||||| ||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
5001971 |
ttaaaggactaaattggtcggttttaaagaaaagggacgaaactgaacttttaaaat |
5001915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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