View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6290_low_20 (Length: 329)
Name: NF6290_low_20
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_20 |
 | |
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| [»] chr4 (12 HSPs) |
| |
|
| [»] scaffold0433 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 329
Target Start/End: Original strand, 3762496 - 3762801
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3762496 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatact |
3762595 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact |
223 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3762596 |
ttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaact |
3762695 |
T |
|
| Q |
224 |
cagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgta |
323 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3762696 |
cagttcgggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgta |
3762795 |
T |
|
| Q |
324 |
attgtt |
329 |
Q |
| |
|
|||||| |
|
|
| T |
3762796 |
attgtt |
3762801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 3776564 - 3776828
Alignment:
| Q |
11 |
agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta |
110 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||| |
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|
| T |
3776564 |
agcataacctctagcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggta |
3776663 |
T |
|
| Q |
111 |
cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa |
210 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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|
| T |
3776664 |
ctaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaa |
3776763 |
T |
|
| Q |
211 |
caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaa |
275 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
3776764 |
caagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgctaactaaaccaaaa |
3776828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 3780890 - 3781143
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||| | |||||||| |||||| |||||||||| |
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|
| T |
3780890 |
gcaaatctgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatact |
3780989 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact |
223 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
3780990 |
ttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaact |
3781089 |
T |
|
| Q |
224 |
cagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagc |
277 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| || ||||||||||| |
|
|
| T |
3781090 |
cagttctggtcctaaagttaaagggttgtcaatcatgttaaccaaaccaaaagc |
3781143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 327
Target Start/End: Original strand, 3751517 - 3751814
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
3751517 |
gcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatact |
3751616 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact |
223 |
Q |
| |
|
|||||||||| |||||||| ||||| | || |||||||| | || || |||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
3751617 |
ttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaact |
3751716 |
T |
|
| Q |
224 |
cagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagcattaaggccggttgagtgtagtttcaatggtggttgaacaattgta |
323 |
Q |
| |
|
|| || |||||||| ||||||||||| |||| |||| |||| |||||||| |||| ||||| || ||| |||||||||||| ||||||||||| |
|
|
| T |
3751717 |
caattgtggtcctatagtcaaagggtcatcaaacatgttgactgaaccaaaa----taag--tggttgtgtttagcttcaatggtggtggaacaattgta |
3751810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 3745700 - 3745952
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||| ||| |||| | |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
3745700 |
gcaaatctaaaacgtccggtaccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatact |
3745799 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact |
223 |
Q |
| |
|
|||||||||| ||||||||| |||| | || | |||| | || |||| ||||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
3745800 |
ttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaact |
3745899 |
T |
|
| Q |
224 |
cagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaag |
276 |
Q |
| |
|
|| || |||||||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
3745900 |
catttttggtcctaaagttaaagggttgtcaataatgttgactaaaccaaaag |
3745952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 3755371 - 3755634
Alignment:
| Q |
11 |
agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta |
110 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| ||| |
|
|
| T |
3755371 |
agcataacctctagcaaatctgaaaaatccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta |
3755470 |
T |
|
| Q |
111 |
cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa |
210 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
3755471 |
cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa |
3755570 |
T |
|
| Q |
211 |
caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaa |
274 |
Q |
| |
|
||| |||||| ||| | |||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
3755571 |
caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
3755634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 3766899 - 3767162
Alignment:
| Q |
11 |
agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta |
110 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||||| ||||||| ||||||||||| ||||| |||| || | | | |||||| ||||| ||||||| ||| |
|
|
| T |
3766899 |
agcataacctctagcaaatctgaaaactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta |
3766998 |
T |
|
| Q |
111 |
cttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa |
210 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
3766999 |
cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa |
3767098 |
T |
|
| Q |
211 |
caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaa |
274 |
Q |
| |
|
||| |||||| ||| | |||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
3767099 |
caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaa |
3767162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 278
Target Start/End: Original strand, 3771304 - 3771396
Alignment:
| Q |
186 |
gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagca |
278 |
Q |
| |
|
|||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
3771304 |
gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggactgaaccaaaagca |
3771396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 3770675 - 3770799
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||||||||||||| | ||||||| | ||||||||| | ||| |||| || | | |||||| ||||| ||||||| ||||||||||||||| |
|
|
| T |
3770675 |
gcaaatctgaaaagtccaataccaccaatcataggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatact |
3770774 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcat |
148 |
Q |
| |
|
|||||||| | ||| |||||||||| |
|
|
| T |
3770775 |
ttccttcagtaaaaacaaaattcat |
3770799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
| Q |
99 |
atagtaatagtacttccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa |
161 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| ||||||||| ||||| ||| ||||||| |
|
|
| T |
3789113 |
atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa |
3789175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 3844991 - 3845128
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||| || |||||||| | | || ||| || |||||||||||||| || ||||||||||| | |
|
|
| T |
3844991 |
gcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatatt |
3845090 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaa |
161 |
Q |
| |
|
| ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
3845091 |
tcccttcaaataatgcaaaattcattatcataagaaaa |
3845128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
| Q |
97 |
agatagtaatagtacttccattatactttccttcaatcaaagcaaa |
142 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
3851509 |
agatagtaatggtactcccattatactttccttcaaacaaggcaaa |
3851554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 278
Target Start/End: Complemental strand, 25985623 - 25985369
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
||||||| |||||| ||||| ||||||| | |||||| ||||||||||||| | | | |||||||||||||| ||||| || || || ||||| |||| |
|
|
| T |
25985623 |
gcaaatcggaaaagaccactaccaccaattataggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtact |
25985524 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact |
223 |
Q |
| |
|
| |||||||| | |||||||||||| | || | || ||| || ||||||| || |||||||||||||| ||||||||||| | ||| ||||| |
|
|
| T |
25985523 |
tcccttcaattatagcaaaattcatagccatgataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaact |
25985424 |
T |
|
| Q |
224 |
cagttctggtcctaaagtcaaagggttgtcaatcatgcggactaaaccaaaagca |
278 |
Q |
| |
|
|| || |||||||| || |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
25985423 |
caattgaggtcctaaggttaaagggttctcaatcatgttaactaaaccaaaagca |
25985369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 10157 - 10020
Alignment:
| Q |
24 |
gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtacttccattatact |
123 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| |||||||| || |||||||| | | || ||| || |||||||||||||| || ||||||||||| | |
|
|
| T |
10157 |
gcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatatt |
10058 |
T |
|
| Q |
124 |
ttccttcaatcaaagcaaaattcattgtcacaagaaaa |
161 |
Q |
| |
|
| ||||||| || |||||||||||| ||| ||||||| |
|
|
| T |
10057 |
tcccttcaaataatgcaaaattcattatcataagaaaa |
10020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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