View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_21 (Length: 324)
Name: NF6290_low_21
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 5522647 - 5522949
Alignment:
| Q |
18 |
acttgttcggttgggaagtcgtcaaaaagatacttgccggattcttctggcgtatacagcaaatccattgcaaaatctaggcaaggtattgacaccccta |
117 |
Q |
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| T |
5522647 |
acttgttcggttgggaagtcatcaaaaagatatttgccggattcttctagcgtatacagcaaatccattgcaaaatctaggcaaggtattgacaccccta |
5522746 |
T |
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| Q |
118 |
cattaacaaaactgtaattcatgaatacttcttttaaaaactaatttcatttatcatggtcatttttatattttcaggtaaactaaattcagttctgact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522747 |
cattaacaaaactgtaattcatgaatacttcttttaaaaactaatttcattgatcatggtcatttttatattttcaggtaaactaaattcagttctgact |
5522846 |
T |
|
| Q |
218 |
aagatgaacatgtttggaagaaagggtgacagttttgcacatggagtccgagagcatggtatgtaatctccaaagattaatcttcaatgtttcacctttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522847 |
aagatgaacatgtttggaagaaagggtgacagttttgcacatggagtccaagagcatggtatgtaatctccaaagattaatcttcaatgtttcacctttg |
5522946 |
T |
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| Q |
318 |
ctt |
320 |
Q |
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||| |
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| T |
5522947 |
ctt |
5522949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 320
Target Start/End: Complemental strand, 51754143 - 51753993
Alignment:
| Q |
170 |
atcatggtcatttttatattttcaggtaaactaaattcagttctgactaagatgaacatgtttggaagaaagggtgacagttttgcacatggagtccgag |
269 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||| |
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| T |
51754143 |
atcatggtcatttttctattttcaggtaaattaaattcagttctgactaagatgaacatgtttggaagaaaagatgatggttttgcacatggtatccgag |
51754044 |
T |
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| Q |
270 |
agcatggtatgtaatctccaaagattaatcttcaatgtttcacctttgctt |
320 |
Q |
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||||||||||||||||| |||| ||||||||| |||||| ||||||| |
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| T |
51754043 |
agcatggtatgtaatcttggaagacctatcttcaatttttcacttttgctt |
51753993 |
T |
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