View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_22 (Length: 308)

Name: NF6290_low_22
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_22
NF6290_low_22
[»] chr5 (10 HSPs)
chr5 (13-291)||(14391343-14391625)
chr5 (13-150)||(14397740-14397877)
chr5 (21-68)||(13857634-13857681)
chr5 (179-273)||(16024441-16024538)
chr5 (205-247)||(14393181-14393223)
chr5 (21-64)||(13866153-13866196)
chr5 (21-59)||(14358599-14358637)
chr5 (105-143)||(16024335-16024373)
chr5 (13-50)||(14389943-14389980)
chr5 (31-63)||(16021913-16021945)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 14391625 - 14391343
Alignment:
Q  13 aatatgtacaaaatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391625 aatatgtacaaaatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtac 14391526  T
Q  113 ctgctgaagtctaatcagcacataaaaggagacctttct----atnnnnnnnnntgacaatgcctagccgatggcttcacacttggaagaaatcgctcag 208  Q
    |||||||||||||||||||||||||||||||||||||||    ||         ||| ||||||||||||||||||||||||||||||||||||||||||    
T  14391525 ctgctgaagtctaatcagcacataaaaggagacctttctataaataaataaaaatgataatgcctagccgatggcttcacacttggaagaaatcgctcag 14391426  T
Q  209 aaaatggcaatgacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttcagccttattatcatgttct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391425 aaaatggcaatgacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttcagccttattatcatgttct 14391343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 14397877 - 14397740
Alignment:
Q  13 aatatgtacaaaatcactacattaggcttgtttatgaagaatgacatacatataacttaactgtgctgcttgtacaaattgaaactatatatttttgtac 112  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  14397877 aatatgtacaaaatcacaacattaagcttgtttatgaagaatgacatacatataacttaactgtgctgcctgtacaaattgaaacaatatatttttgtac 14397778  T
Q  113 ctgctgaagtctaatcagcacataaaaggagacctttc 150  Q
    |||||||||||||| |||||||||||||||||||||||    
T  14397777 ctgctgaagtctaaccagcacataaaaggagacctttc 14397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 13857634 - 13857681
Alignment:
Q  21 caaaatcactacattaggcttgtttatgaagaatgacatacatataac 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13857634 caaaatcacgacattaggcttgtttatgaagaatgacatacatataac 13857681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 273
Target Start/End: Original strand, 16024441 - 16024538
Alignment:
Q  179 atggcttcacacttggaagaaatcgctcagaaaatggcaatgacattccatcttcttcaa---catgggcatcagctattccttcaacttcaccttca 273  Q
    ||||||||||| || ||||||| || ||||||||||| |||||  |||||||| ||||||   |||| |||||||| ||||||||| |||||||||||    
T  16024441 atggcttcacatttagaagaaagcgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccattccttcagcttcaccttca 16024538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 14393223 - 14393181
Alignment:
Q  205 tcagaaaatggcaatgacattccatcttcttcaacatgggcat 247  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  14393223 tcagaaaatggcaatgacattccatctccttcaacaggggcat 14393181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 13866153 - 13866196
Alignment:
Q  21 caaaatcactacattaggcttgtttatgaagaatgacatacata 64  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||||    
T  13866153 caaaatcacgacattgggcctgtttatgaagaatgacatacata 13866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 14358599 - 14358637
Alignment:
Q  21 caaaatcactacattaggcttgtttatgaagaatgacat 59  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  14358599 caaaagcacaacattaggcttgtttatgaagaatgacat 14358637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 16024335 - 16024373
Alignment:
Q  105 ttttgtacctgctgaagtctaatcagcacataaaaggag 143  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16024335 ttttgtacctgatgaagtctaatcagcacatagaaggag 16024373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14389980 - 14389943
Alignment:
Q  13 aatatgtacaaaatcactacattaggcttgtttatgaa 50  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  14389980 aatatgtgcaaaatcacaacattaggcttgtttatgaa 14389943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 16021913 - 16021945
Alignment:
Q  31 acattaggcttgtttatgaagaatgacatacat 63  Q
    |||||||||||||| ||||||||||||||||||    
T  16021913 acattaggcttgttaatgaagaatgacatacat 16021945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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