View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_23 (Length: 303)
Name: NF6290_low_23
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 287
Target Start/End: Complemental strand, 25300281 - 25300011
Alignment:
| Q |
17 |
accaaccaaactcaatagcctctcaacttaccccaaacatcaaggttcactcaaatacgtctcttttgcattcagagacaacaaannnnnnnaaagaggt |
116 |
Q |
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| T |
25300281 |
accaacccaactcaatagcctctcaacttaccccgaatatcaaggttcactcaaatatgtctcttttgcattccgagacaacaaatttttctaaagaggt |
25300182 |
T |
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| Q |
117 |
ggaatcttctatgctttgtttgggaaccccatatcaatatggggactttcacgctataatggattcatcagaatttaacaataactcttaccgaaatcag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25300181 |
ggaatcttctatgctttgtttgggaaccccatatcaatatggtgactttcacgctataatggattcatcagaatttaacaataactcttaccgaaatcag |
25300082 |
T |
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| Q |
217 |
gtaaatcacttatacttatatccatcatgcctaaagtggcaacattagtgcaatatgatgtaatggttcat |
287 |
Q |
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| T |
25300081 |
gtaaatcacttatacttatatccatcatgcctaaagtggcagcattggtgcaatatgatgtaatggttcat |
25300011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 25275220 - 25275396
Alignment:
| Q |
75 |
gtctcttttgcattcagagacaacaaannnnnnnaaagaggtggaatcttctatgctttgtttgggaaccccatatcaatatggggactttcacgctata |
174 |
Q |
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|||| |||||| |||| |||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
25275220 |
gtcttttttgctttcaaagacaacaaattttcctaaagaggtgaaatcttctttgctttgtttgggaaccccatatcaatctggggactttcaagctata |
25275319 |
T |
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| Q |
175 |
atggattcatcagaatttaacaataactcttaccgaaatcaggtaaatcacttatacttatatccatcatgcctaaa |
251 |
Q |
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| T |
25275320 |
atgggttcatcagaattgaacaacaactcttaccgaaatcaagtaaatcacttatacttatatccaccatgcctaaa |
25275396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 248
Target Start/End: Complemental strand, 25276715 - 25276542
Alignment:
| Q |
75 |
gtctcttttgcattcagagacaacaaannnnnnnaaagaggtggaatcttctatgctttgtttgggaaccccatatcaatatggggactttcacgctata |
174 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
25276715 |
gtctcttttgaattcagagacaacaaatttttctaaagaggtggaatcttctttgctttgtttgggaaccccatatcaatttggggactttcaacctata |
25276616 |
T |
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| Q |
175 |
atggattcatcagaatttaacaataactcttaccgaaatcaggtaaatcacttatacttatatccatcatgcct |
248 |
Q |
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| T |
25276615 |
atgggtttatcagaattgaacaacaactcttaccgaaatcaagtaaatcacttatacttgtatccattatgcct |
25276542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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