View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6290_low_26 (Length: 290)
Name: NF6290_low_26
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 8704792 - 8705054
Alignment:
| Q |
11 |
cataggtgcgaaaagtaatagtcatcaagtgaaccgtcccactctaacccatttatattatctgacccactgggccgaggcgggctggatcggaccagtc |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8704792 |
cataggtgcgaaaagtaatagtcataaagtgaaccgtcccaatctaacccatttatattatctgacccactggaccga-gcgggctggatcggaccagtc |
8704890 |
T |
|
| Q |
111 |
catttgatagctctatatggaacaatgtgtgttttccttgccctatnnnnnnnncccaacttacatagggtttcaaacctccaacccttagcagcagcca |
210 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8704891 |
catttgacaactctatatggaacaatgtgtgttttccttgccttataaaaaaaacccaacttacatagggtttcaaacctccaacccttagcagcagcca |
8704990 |
T |
|
| Q |
211 |
cttcctaccctttgcccaacttccgccacagtctaccattttccaccagatgcctgtttggatt |
274 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
8704991 |
cttcctaccctttccccaactgccgccacactctaccattttccgccggatgcctgtttggatt |
8705054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 8723748 - 8723919
Alignment:
| Q |
58 |
cccatttatattatctgacccactgggccgaggcgggctggatcggaccagtccatttgatagctctatatggaacaatgtgtgttttccttgccctatn |
157 |
Q |
| |
|
|||||||| || | |||||| ||||||||||||| ||||||| |||||||| |||||||| |||||||| |||| ||||| ||||||| ||| ||| |
|
|
| T |
8723748 |
cccatttacatgagctgaccaactgggccgaggcaggctggaccggaccagcccatttgacagctctat--ggaattgtgtgttttttcctagccttata |
8723845 |
T |
|
| Q |
158 |
nnnnnnncccaacttacatagggtttcaaacctccaaccctt--agcagcagccacttcctaccctttgcccaac |
230 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8723846 |
aaagaa-cccaactcacatagggtttcaaacctacaaccctagcagcagcagccacttcctaccctttgcccaac |
8723919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 40685830 - 40685780
Alignment:
| Q |
48 |
cccactctaacccatttatattatctgacccactgggccgaggcgggctgg |
98 |
Q |
| |
|
||||||| |||||||||||| | || |||||||||||||||||||||||| |
|
|
| T |
40685830 |
cccactcagacccatttatatgagcttacccactgggccgaggcgggctgg |
40685780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University