View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_3 (Length: 651)
Name: NF6290_low_3
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 209 - 637
Target Start/End: Complemental strand, 40736217 - 40735791
Alignment:
| Q |
209 |
tttgtttactaaaaaatcttttaacaaagcaaacccgtgtctttgttgttcagagattagggttatcaaattgaattgaattcaaggttatgttaatcaa |
308 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40736217 |
tttgtttactaaaaaatcttttaacaaggcaaacccgtgtctttgttgttcagagattagggttatcaaattgaattcaattcaaggttatgttaatcaa |
40736118 |
T |
|
| Q |
309 |
cgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatgattcgctcatatcatctcatcgctgcaaatttcagatacttg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40736117 |
cgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcattgagaatgattcgctcat--catctcatcgctgcaaatttcagatacttg |
40736020 |
T |
|
| Q |
409 |
atgtaggagcgttccacaggacattggattacggagttttcagagttatcgaaggaggaggttatatgactatgacatattcattttcattttctaaaca |
508 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40736019 |
atgtaggagtgttccacaggacattggattacggagttttcagagttatcgaaggaggaggttatatgactatgacatattcattttcattttctaaaca |
40735920 |
T |
|
| Q |
509 |
aaatcatattaagatttatcgtgctaatcttttctcacc-nnnnnnnnacatttgcagttggacatggtgttaagctaaataacccggtgctaccaatcc |
607 |
Q |
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| T |
40735919 |
aaatcatattaagatttatcgtgctaatcttttctcacctttttttttacatttgcagttggacatggt-ttaagctaaataacacggtgctaccaatcc |
40735821 |
T |
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| Q |
608 |
gatgccttagacagagtagggatttgaagt |
637 |
Q |
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| T |
40735820 |
gatgccttagaaagagtaaggatttgaagt |
40735791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 40736410 - 40736277
Alignment:
| Q |
15 |
atataagatggaggaaaacaaagaggatatttgaggaaggattgacaaaaataaagagagtttgtcgcccatttaggccttagaaagttcgatggattag |
114 |
Q |
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| T |
40736410 |
atataagatggaggaaaacaaagaggatatttgaggaaggattgacaaaaataaagagagtttgtcgcccatttacgccttagaaagttcgatggattag |
40736311 |
T |
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| Q |
115 |
tctcctcaagttgcgcgcgaaagatagttggttt |
148 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
40736310 |
tctccgcaagttgcgcgcgaaagatagttggttt |
40736277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 394 - 628
Target Start/End: Original strand, 37469779 - 37470005
Alignment:
| Q |
394 |
aatttcagatacttgatgtaggagcgttccacaggacattggattacggagttttcagagttatcgaaggaggaggttatatgactatgacatattcatt |
493 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| ||| ||| |||||||||||| |||||||| |||| | | | |||||| |
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| T |
37469779 |
aatttcagatacatgatgtaggagttttccacaggacattggattatggattttccagagttatcgacagaggaggt-atat---tcaccctttttcatt |
37469874 |
T |
|
| Q |
494 |
ttcattttctaaacaaaatcatattaagatttatcgtgctaatcttttctcaccnnnnnnnnacatttgcagttggacatggtgttaagctaaataaccc |
593 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||| ||||||| || ||| ||| |
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| T |
37469875 |
ttcattttctaaacaaaatcatattaagatttatcttggtaatcttttctcacc----ttttacaattgcagttggacacagtgttaaactgaattacca |
37469970 |
T |
|
| Q |
594 |
ggtgctaccaatccgatgccttagacagagtaggg |
628 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||| |
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| T |
37469971 |
ggtgctaccaattcgatgccttagacaaagtaggg |
37470005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 37469588 - 37469674
Alignment:
| Q |
281 |
gaattgaattcaaggttatgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatga |
367 |
Q |
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| T |
37469588 |
gaattaaattcaaggttatgttaatcaacgcttcctccagaatgaatctcgcctacagtatgaggcttccttcatcctccagaatga |
37469674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 37469664 - 37469708
Alignment:
| Q |
315 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcatc |
359 |
Q |
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| T |
37469664 |
ctccagaatgaatctctccaatggcgcgaggcttcgctcatcatc |
37469708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 33004154 - 33004085
Alignment:
| Q |
298 |
atgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatcatcgagaatga |
367 |
Q |
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| T |
33004154 |
atgttaatcaatgcttcctccagaatgaatctctccaatggcttgaggcttccttcatcttccagaatga |
33004085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 17595049 - 17594991
Alignment:
| Q |
298 |
atgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatc |
356 |
Q |
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|||||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
17595049 |
atgttaatcaacgcttcctccaagatgaatctctcgtatggcgtgacgcttccttcatc |
17594991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 17594990 - 17594946
Alignment:
| Q |
315 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcatc |
359 |
Q |
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|||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
17594990 |
ctccagtatgagtctctccaatggcgtgaggcttcgctcatcatc |
17594946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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