View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6290_low_30 (Length: 269)
Name: NF6290_low_30
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 40689284 - 40689533
Alignment:
| Q |
14 |
caaaggcaaaagaaccaaaagggttaggccacaatctcctatacctttctccatcactgctaattcttcaactggtgaaggaggaggaggaggaacagga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40689284 |
caaaggcaaaagaaccaaaagggttaggccacaatctcctatacctttctccatcactgctaattcttcaactggtgaaggaggaggaggagg---agga |
40689380 |
T |
|
| Q |
114 |
gaaagagaagattgcaacaatgttgatgatgttaacaa------------taacgccaacaacaataatacatctccaacaacttcttatgttgaagaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40689381 |
gaaagagaagattgcaacaatgttgatgatgttaacaataataccatcattaacaccaacaacaataatacatctccaacaacttcttatgttgaagaaa |
40689480 |
T |
|
| Q |
202 |
aacaagacagtactgttgttattgatgaagaatatgatatggcaaattgtttg |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40689481 |
aacaagacagtactgttgttattgatgaagaatatgatatggcaaattgtttg |
40689533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University