View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_32 (Length: 263)

Name: NF6290_low_32
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_32
NF6290_low_32
[»] chr1 (12 HSPs)
chr1 (18-253)||(6403178-6403413)
chr1 (46-243)||(6419549-6419746)
chr1 (183-243)||(6414271-6414331)
chr1 (174-249)||(6371874-6371949)
chr1 (122-231)||(6390033-6390138)
chr1 (172-243)||(6397185-6397256)
chr1 (178-243)||(6438600-6438665)
chr1 (182-243)||(6426923-6426984)
chr1 (178-243)||(6377741-6377806)
chr1 (187-243)||(6379505-6379561)
chr1 (187-233)||(6357836-6357882)
chr1 (178-230)||(6366071-6366123)
[»] chr3 (1 HSPs)
chr3 (122-226)||(19922838-19922938)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 6403178 - 6403413
Alignment:
Q  18 cataaacaaaattatgcactgttccgactcattttcctcttgtactgttaaagggttttaaagtcatatacccttcttgtctttttcttcctcaaacaaa 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6403178 cataaacaaaattttgcactgttccgactcattttcctcttgtactgttaaagggttttaaagtcatatacccttcttgtcttttccttcctcaaacaaa 6403277  T
Q  118 aagcttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagcagatcttgggaggaagatatttactggaaccattttc 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6403278 aagcttgcaactttgaaccatttccactctccgcttctgtttcaaatggaagaagatggaagtagatcttgggaggaagatatttactggaaccattttc 6403377  T
Q  218 aattcatccatttcactctatttcttagcacctttg 253  Q
    ||||||||||||||||||||||||||||||||||||    
T  6403378 aattcatccatttcactctatttcttagcacctttg 6403413  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 6419549 - 6419746
Alignment:
Q  46 tcattttcctcttgtactgttaaagggttttaaagtcatatacccttcttgtctttttcttcctcaaacaaaaagcttgcaactttgaaccatttctact 145  Q
    |||| |||||| || || |||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6419549 tcatcttcctcgtgaaccgttaaaagggtttaaagccatatacccttcttttctttttcttcctcaaacaaaaagcttgcaactttgaaccatttccact 6419648  T
Q  146 ctccgcttctgtttcaaatggaagaagatggaagcagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    ||| |||||| ||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||| |||||||| | |||||||    
T  6419649 ctctgcttctctttaaaatggaagtagatggaagcagatcctgggaagaagatatttactggaacaattttcagttcattcatttcacccaatttctt 6419746  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 6414271 - 6414331
Alignment:
Q  183 atcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||    
T  6414271 atcttgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttctt 6414331  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 6371874 - 6371949
Alignment:
Q  174 tggaagcagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttcttagcacc 249  Q
    |||||| |||||  |||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  6371874 tggaagaagatcacgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttctgagcacc 6371949  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 6390033 - 6390138
Alignment:
Q  122 ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagcagatcttgggaggaagatatttactggaaccattttcaatt 221  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||||||   | | |||||||||| ||| ||| | ||||||||||||||||| || ||    
T  6390033 ttgcacctttgaaccatttc-actctctgcttctgtttcaaatggaaga---tagcagcagatctttggaagaaaacatttactggaaccatttccagtt 6390128  T
Q  222 catccatttc 231  Q
    ||||||||||    
T  6390129 catccatttc 6390138  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 6397185 - 6397256
Alignment:
Q  172 gatggaagcagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || |||||||||||||| | |||||||    
T  6397185 gatggaagcagatcttgggaagaagatatttactggacccatttccagttcatccatttcacccaatttctt 6397256  T

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Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 6438600 - 6438665
Alignment:
Q  178 agcagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||| |||||||    
T  6438600 agcagatcttgggaagaagatatttattggacccattttcaattcattcatttcactcaatttctt 6438665  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 6426923 - 6426984
Alignment:
Q  182 gatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    |||| ||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||    
T  6426923 gatcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttctt 6426984  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 6377741 - 6377806
Alignment:
Q  178 agcagatcttgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    ||||| |||||||||||||| |||||||||| |||||| |||||||||| |||||| | |||||||    
T  6377741 agcaggtcttgggaggaagacatttactggacccatttccaattcatccgtttcacccaatttctt 6377806  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 6379505 - 6379561
Alignment:
Q  187 tgggaggaagatatttactggaaccattttcaattcatccatttcactctatttctt 243  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||| | |||||||    
T  6379505 tgggaggaagacatttactggacccatttccaattcatccatttcacccaatttctt 6379561  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 6357836 - 6357882
Alignment:
Q  187 tgggaggaagatatttactggaaccattttcaattcatccatttcac 233  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  6357836 tgggaggaagacatttactggacccattttcagttcatccatttcac 6357882  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 6366071 - 6366123
Alignment:
Q  178 agcagatcttgggaggaagatatttactggaaccattttcaattcatccattt 230  Q
    |||| ||| ||||||||||| ||||| |||  |||||||||||||||||||||    
T  6366071 agcaaatcatgggaggaagagatttattggtcccattttcaattcatccattt 6366123  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 19922838 - 19922938
Alignment:
Q  122 ttgcaactttgaaccatttctactctccgcttctgtttcaaatggaagaagatggaagcagatcttgggaggaagatatttactggaaccattttcaatt 221  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||   | | | |||||||||||| ||||| ||||||  ||||||||| || ||    
T  19922838 ttgcaactttgaaccatttc-actctctgcttctgtttcaaatggaaga---tagcaacagatcttgggaagaagacatttacccgaaccatttccagtt 19922933  T
Q  222 catcc 226  Q
    |||||    
T  19922934 catcc 19922938  T

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