View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6290_low_33 (Length: 255)
Name: NF6290_low_33
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 7945973 - 7945745
Alignment:
| Q |
17 |
agttttgggcacaaactcaccctctctaggggcaatcttggcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtatattagacgat |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7945973 |
agttttgggcacaaactcaccctctcttggggcaatcttggcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtatattagacgat |
7945874 |
T |
|
| Q |
117 |
tttaaatcacgaaaaatcactggtggatctgcgtagttatgcagatattcaagtcctcttgctgatccgttggcaattttcatccttgtatgccaatcca |
216 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7945873 |
tttaaatcacgaaaaatcaccggtggatctgcgtagttatgcagatattcaagtcctcttgctgctccgttggcaattttcatccttgtatgccaatcca |
7945774 |
T |
|
| Q |
217 |
atggttccttatcattacctatatctgtg |
245 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7945773 |
atggttccttatcattacctatatctgtg |
7945745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 40225245 - 40225330
Alignment:
| Q |
57 |
gcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtatattagacgattttaaatcacgaaaaatcactggtgg |
142 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| ||||| || || | ||| ||||||||| | ||||| ||||| |
|
|
| T |
40225245 |
gcaagtccaaaatcagagagttttggattgaaattttcatccaagagtatgtttgatgctttgaaatcacgatatatcaccggtgg |
40225330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 19993313 - 19993362
Alignment:
| Q |
57 |
gcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
19993313 |
gcaagtccaaaatcagaaagctttggattgtagttttcatctaatagtat |
19993362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 10979488 - 10979528
Alignment:
| Q |
57 |
gcaagaccaaaatcagaaagctttggattgaaattttcatc |
97 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
10979488 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
10979528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 11007892 - 11007932
Alignment:
| Q |
57 |
gcaagaccaaaatcagaaagctttggattgaaattttcatc |
97 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
11007892 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
11007932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University