View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_34 (Length: 254)
Name: NF6290_low_34
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 30877089 - 30876844
Alignment:
| Q |
1 |
atcacacaaaatatgcaggtcacggtatgcaagatgatctattcaagtgactagaggcggatccaccgtaaggcacggtgtggcaacggccacactggat |
100 |
Q |
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| T |
30877089 |
atcacacaaaatatgcaggtcatggtatgcgtgatgatctattcaggtgattagaggcggattcaccgtaaggcacggtgtggcaatggccacactggat |
30876990 |
T |
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| Q |
101 |
taatacctaannnnnnnnnnaatatactagtcataagtaatgcattatatataatatatgttggaaaattatcatatttagttacttggcctagcggtaa |
200 |
Q |
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| T |
30876989 |
taatacctatttttttttttaatatattagtcataagtaatgcattatatataatatatgttggaaaattatcatatttagttacttggcctagcggtaa |
30876890 |
T |
|
| Q |
201 |
acactttgctaccttatagtgcatcttgggttcaacaccctatgct |
246 |
Q |
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| T |
30876889 |
acactttgctaccttgtagtgcgtcttgggttcaacaccctttgct |
30876844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 30876716 - 30876667
Alignment:
| Q |
197 |
gtaaacactttgctaccttatagtgcatcttgggttcaacaccctatgct |
246 |
Q |
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| T |
30876716 |
gtaaacactttgctaccttgtagtgcgtcttgggttcaacaccctttgct |
30876667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 23657954 - 23658015
Alignment:
| Q |
140 |
atgcattatatataatatatgttggaaaattatcatatttagttacttggcctagcggtaaa |
201 |
Q |
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| T |
23657954 |
atgcattatatataatatatgttggaagattatcatgtttagttacttggcctagcggtaaa |
23658015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 42981391 - 42981310
Alignment:
| Q |
121 |
aatatactagtcataagtaatgcattatatataatatatgttggaaaattatcatatttagttacttggcctagcggtaaac |
202 |
Q |
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|||||| ||||| ||| || |||||||||||||||||||||||||| ||||| || |||| ||||||||||||| ||||||| |
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| T |
42981391 |
aatatattagtcttaaatattgcattatatataatatatgttggaagattatgatgtttaattacttggcctagtggtaaac |
42981310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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