View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_36 (Length: 251)
Name: NF6290_low_36
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 51753659 - 51753886
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
112 |
Q |
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| T |
51753659 |
atgaagaggaggcctgctataggacctgatgttgttgataagtaacactgtgatgctttcaacagcttctctccatctttaacactaaaaagttccataa |
51753758 |
T |
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| Q |
113 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtccta-tctcactgcaggtta |
211 |
Q |
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| T |
51753759 |
acactttttctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttggtccaagtctcactgcagggta |
51753858 |
T |
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| Q |
212 |
caataacagtttcaagccatcagttaca |
239 |
Q |
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| T |
51753859 |
aaataacagtttcaagctatcaggtaca |
51753886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 51766426 - 51766507
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
94 |
Q |
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| T |
51766426 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttg |
51766507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 12196175 - 12196353
Alignment:
| Q |
13 |
atgaagaggaggccagctataagacctgatgtggttgataggtaacactgagatgctttcaacagcttctccccgtcgtttgcattaaaaagttgcataa |
112 |
Q |
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| T |
12196175 |
atgaagagtaggcctgctagaggaccagatgttgttgatagataacattgagatgcttttagtagcctctctccatcttttacactaaatagttgcatga |
12196274 |
T |
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| Q |
113 |
atactttctctactccgccaacctgaagaattctggctcccaacctcaatttcccttttactgtatctgttatctttgg |
191 |
Q |
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| T |
12196275 |
acaccttttccactcctccaacttgaagaattctagctcctaagctcagctttcctttcactgtatcggttatgtttgg |
12196353 |
T |
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