View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_39 (Length: 240)
Name: NF6290_low_39
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_39 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 52242763 - 52242998
Alignment:
| Q |
5 |
gaacagaacagaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaatgataataatttgaattgtcaccgag |
104 |
Q |
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| T |
52242763 |
gaacagaacagaactgaactgaactgagaggtttgtgagaaagaacaatgatgtcagtgaagagaattttgaaataataataatttgaattgtcaccaag |
52242862 |
T |
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| Q |
105 |
gacagagttaggtggcaatggaaatctagtagaaattgcaaaaccacataatacaatatggataaagtgtgaataatttgtgatactaaataaatcaaat |
204 |
Q |
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| T |
52242863 |
gacagagttaggtggcactggaaatctagtagaaattgcaaaaccacataatacaatatggataaagtgtgaataatttgtgatactaaataaatcaaat |
52242962 |
T |
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| Q |
205 |
gtctacatattgtaactgaaatcaaaatgaacacac |
240 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52242963 |
gtctacatattgtaactgaaatcaaaatgaacacac |
52242998 |
T |
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