View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_4 (Length: 585)
Name: NF6290_low_4
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Original strand, 13138697 - 13139254
Alignment:
| Q |
19 |
agcaatgatcgccaacaatattaagtcatattttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttaca |
118 |
Q |
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| T |
13138697 |
agcattgatcgccgacaatattaagtcagattttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttaca |
13138796 |
T |
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| Q |
119 |
cagttttatttttgttgttagaactagacaacnnnnnnngtcacaaaatacatctttcattggcatgaacatgatgtatgaaacattgaggtcaacatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
13138797 |
cagttttatttttgttgttagaactagacaactttttttgtcacaaaatacatctttcattggcatgaacatgatgtattaaacattgaggtcatcatgt |
13138896 |
T |
|
| Q |
219 |
attcttttaaacgtatatgatcattctatcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtt |
318 |
Q |
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| T |
13138897 |
attcttttaaacgtatatgatcattctatcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtt |
13138996 |
T |
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| Q |
319 |
tattaaaactaatgtcaannnnnnnnatcggtgacctaataaaagtagagctttagcagattttattgaggtccttatcattgtcaactttgtctcataa |
418 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13138997 |
tattaaaactaatgtcaattttttttatcggtgacctaataaaagtagagctttagcagattttattgaggtccttatcattgtcaactttgcctcataa |
13139096 |
T |
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| Q |
419 |
taatatgctacatatacttacatt-aatttgagaagtaaaatgttatatgcttatcttataatcatttcctttctctcaaaggtccagcatctccataaa |
517 |
Q |
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||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13139097 |
taatatgctacatatactttcattaaatttgagaaataaaatgttatatgcttatcttataatcatttcctttctctcaaaggtccaggatctccataaa |
13139196 |
T |
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| Q |
518 |
ctgcaaaattattctcttcaaagtctctgataactcgccctcttctcttttgcctttg |
575 |
Q |
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| T |
13139197 |
ctgcaaaattatcctcttcaaagtctctgataactcgccctcttctcttttgcctttg |
13139254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 502 - 544
Target Start/End: Original strand, 16024800 - 16024842
Alignment:
| Q |
502 |
ccagcatctccataaactgcaaaattattctcttcaaagtctc |
544 |
Q |
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| T |
16024800 |
ccagcatctccataaactgcaaaattatcctcttcaaagtctc |
16024842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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