View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_41 (Length: 237)

Name: NF6290_low_41
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_41
NF6290_low_41
[»] scaffold0648 (1 HSPs)
scaffold0648 (1-222)||(5837-6058)
[»] scaffold0274 (1 HSPs)
scaffold0274 (1-222)||(17400-17621)
[»] chr1 (7 HSPs)
chr1 (1-222)||(41426349-41426570)
chr1 (5-214)||(41431750-41431959)
chr1 (1-214)||(41442359-41442570)
chr1 (57-170)||(41453659-41453772)
chr1 (4-97)||(41448905-41448999)
chr1 (59-134)||(52472990-52473066)
chr1 (58-91)||(7238212-7238245)
[»] chr2 (3 HSPs)
chr2 (4-222)||(33370029-33370248)
chr2 (1-194)||(33363714-33363907)
chr2 (45-164)||(5839274-5839393)
[»] chr7 (1 HSPs)
chr7 (5-222)||(7762943-7763160)
[»] chr4 (1 HSPs)
chr4 (4-132)||(1004661-1004789)
[»] chr8 (1 HSPs)
chr8 (3-158)||(21223810-21223965)


Alignment Details
Target: scaffold0648 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6058 - 5837
Alignment:
Q  1 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6058 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 5959  T
Q  101 aatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttga 200  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5958 aatcacagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagcattaatgaaaaaagtgatagaaatggtcatgttga 5859  T
Q  201 gcaatatgccagaagctggttt 222  Q
    ||||||||||||||||||||||    
T  5858 gcaatatgccagaagctggttt 5837  T

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Target: scaffold0274 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17400 - 17621
Alignment:
Q  1 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17400 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 17499  T
Q  101 aatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttga 200  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17500 aatcacagccctcatgagatccattcttgattcacagactctcacaaatattgtatctgatgagcattaatgaaaaaagtgatagaaatggtcatgttga 17599  T
Q  201 gcaatatgccagaagctggttt 222  Q
    ||||||||||||||||||||||    
T  17600 gcaatatgccagaagctggttt 17621  T

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Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41426570 - 41426349
Alignment:
Q  1 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  41426570 attctcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaat 41426471  T
Q  101 aatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttga 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41426470 aatcacagccctcatgagatccatccttgattcacagactctcacaaatattgtatctgatgagaattaatgaaaaaagtgaaagaaatggtcatgttga 41426371  T
Q  201 gcaatatgccagaagctggttt 222  Q
    ||||||||||||||||||||||    
T  41426370 gcaatatgccagaagctggttt 41426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 41431959 - 41431750
Alignment:
Q  5 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 104  Q
    |||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41431959 tcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatc 41431860  T
Q  105 acagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttgagcaa 204  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||    
T  41431859 acagccctcatgagatccatccttgattcgaagactctcacaaatattgtatctgatgagcattaaagaaaaaagtcaaagatatggtcaggttgatcaa 41431760  T
Q  205 tatgccagaa 214  Q
    ||||||||||    
T  41431759 tatgccagaa 41431750  T

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Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 41442570 - 41442359
Alignment:
Q  1 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 100  Q
    ||||| |||||| |||||||||| ||||||||||  |||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41442570 attcttaaccacgtaccgggggtacattgggatagccagttggaaagtgtacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 41442471  T
Q  101 aatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttga 200  Q
    ||||||||| |||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||  || ||||||||||| ||| |    
T  41442470 aatcacagctctcaagagatccatccttgattcgcagactctcacaaatattgtatttgatgagcattaaagaaaaaa--gacagaaatggtcaggttaa 41442373  T
Q  201 gcaatatgccagaa 214  Q
    ||||||| ||||||    
T  41442372 gcaatataccagaa 41442359  T

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Target: chr1; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 170
Target Start/End: Complemental strand, 41453772 - 41453659
Alignment:
Q  57 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtat 156  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  157 ctgatgagcattaa 170  Q
    ||||||||||||||    
T  41453672 ctgatgagcattaa 41453659  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 41448999 - 41448905
Alignment:
Q  4 ctcaaccacataccgggggttcattgggatattcaggggg-aaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctcc 97  Q
    ||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  41448999 ctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaaaagaccgttatggtaaggagtctcttctgctcc 41448905  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 52473066 - 52472990
Alignment:
Q  59 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattca 134  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| |||||||||| |||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattca 52472990  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 7238212 - 7238245
Alignment:
Q  58 aaaagaaaagaccgtcatggtaaggagtcccttc 91  Q
    |||||||||||||||||||||||| |||||||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttc 7238245  T

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Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 33370248 - 33370029
Alignment:
Q  4 ctcaaccacataccggggg--ttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaata 101  Q
    |||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33370248 ctcaaccacataccgggggggtccattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaata 33370149  T
Q  102 atcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttgag 201  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||    
T  33370148 atcacagccctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgtgcattaaagataaaagtgaaagaaatggtcaggttgag 33370049  T
Q  202 caatatgccagaagctggttt 222  Q
    |||| || ||||||| |||||    
T  33370048 caatttg-cagaagcaggttt 33370029  T

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Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33363907 - 33363714
Alignment:
Q  1 attctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaat 100  Q
    |||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33363907 attctcaaccacgtaccgggggtacattgggatatttaggggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaat 33363808  T
Q  101 aatcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtca 194  Q
    ||||||||| |||||||||||||||||||||||  | | |||||||||||||||||||||  |||||||| ||||||||| |||||||||||||    
T  33363807 aatcacagctctcatgagatccatccttgattcgaagattctcacaaatattgtatctgacaagcattaaagaaaaaagtcaaagaaatggtca 33363714  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 164
Target Start/End: Original strand, 5839274 - 5839393
Alignment:
Q  45 aagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcacatactctca 144  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| | ||||  |    
T  5839274 aagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacagccctcatgagatccattcttgattcataaactcgaa 5839373  T
Q  145 caaatattgtatctgatgag 164  Q
    ||||||||| ||||||||||    
T  5839374 caaatattgaatctgatgag 5839393  T

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Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 7762943 - 7763160
Alignment:
Q  5 tcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatc 104  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7762943 tcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttgtgctccaataatc 7763042  T
Q  105 acagccctcatgagatccatccttgattcacatactctcacaaatattgtatctgatgagcattaatgaaaaaagtgaaagaaatggtcatgttgagcaa 204  Q
    ||||| |||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||  |    
T  7763043 acagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgagcattaaagaaaaaagtcaaataaatggtcaggttgagtga 7763142  T
Q  205 tatgccagaagctggttt 222  Q
     | ||||||||| |||||    
T  7763143 aaagccagaagcaggttt 7763160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 1004789 - 1004661
Alignment:
Q  4 ctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataat 103  Q
    |||||| ||||||||||||| || ||||||| | |   || ||||||| ||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  1004789 ctcaacgacataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataat 1004690  T
Q  104 cacagccctcatgagatccatccttgatt 132  Q
     ||||||||||  |||| |||| ||||||    
T  1004689 tacagccctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 21223810 - 21223965
Alignment:
Q  3 tctcaaccacataccgggggttcattgggatattcagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataa 102  Q
    |||||||  |||||||| ||| |||||||| |  ||  ||||||| ||| |||||||||||| || || ||||| ||||| || || |||||||||||||    
T  21223810 tctcaacagcataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataa 21223909  T
Q  103 tcacagccctcatgagatccatccttgattcacatactctcacaaatattgtatct 158  Q
    ||||||||||||  ||||| || ||||||||| | ||||| |||||||||| ||||    
T  21223910 tcacagccctcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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