View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_44 (Length: 223)
Name: NF6290_low_44
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_44 |
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| [»] scaffold0201 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 55266031 - 55265904
Alignment:
| Q |
77 |
atttctcataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctctgttctgttcagtggttagtt |
176 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55266031 |
atttctcataaaatatag-aaaaactagcgataagatatttatccttaccaacagacatccctcactcactcactcctct-----gttcagtggttagtt |
55265938 |
T |
|
| Q |
177 |
aacacgtttatcttggctgattgcatgtttttga |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
55265937 |
aacacgtttatcttggctgattgcatgtttttga |
55265904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 55271916 - 55271852
Alignment:
| Q |
84 |
ataaaatatagcaaaaactagcgataagatatttatccttaccaacagacatccctcactcactc |
148 |
Q |
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||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
55271916 |
ataaaatgtagcaaaaactagcaataagatagttatccttaccgacagacatcccacactcactc |
55271852 |
T |
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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 29227231 - 29227272
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaagttat |
59 |
Q |
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| T |
29227231 |
gagaaagtagaagaacaatgtgtgtatgagagagaaagttat |
29227272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 55271840 - 55271796
Alignment:
| Q |
166 |
agtggttagttaacacgtttatcttggctgattgcatgtttttga |
210 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||| ||||| |
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| T |
55271840 |
agtggttagttaacacttttgtctttgctgattgcatgtgtttga |
55271796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 8555 - 8516
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaagtt |
57 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
8555 |
gagaaagtagaaggacaatgtgagtatgagagagaaagtt |
8516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 101894 - 101933
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaagtt |
57 |
Q |
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|||||| |||||||||||||||||||||||| |||||||| |
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| T |
101894 |
gagaaaatagaaggacaatgtgagtatgagagagaaagtt |
101933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 32777695 - 32777734
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaagtt |
57 |
Q |
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|
||||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
32777695 |
gagaaagtagaaggacagtgtgagtatgagagagaaagtt |
32777734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 8847570 - 8847529
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaagttat |
59 |
Q |
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|
||||||||||||| | |||||| ||||||||||||||||||| |
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| T |
8847570 |
gagaaagtagaagaataatgtgtgtatgagaaagaaagttat |
8847529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 17097790 - 17097826
Alignment:
| Q |
18 |
gagaaagtagaaggacaatgtgagtatgagaaagaaa |
54 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |
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| T |
17097790 |
gagaaagtagaatgacaatgtgagtatgagatagaaa |
17097826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42446282 - 42446318
Alignment:
| Q |
21 |
aaagtagaaggacaatgtgagtatgagaaagaaagtt |
57 |
Q |
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|
||||||||||||||||||||||| |||| |||||||| |
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| T |
42446282 |
aaagtagaaggacaatgtgagtaagagagagaaagtt |
42446318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 7919053 - 7919089
Alignment:
| Q |
21 |
aaagtagaaggacaatgtgagtatgagaaagaaagtt |
57 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
7919053 |
aaagtagaaggacaatatgagtatgagagagaaagtt |
7919089 |
T |
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