View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_45 (Length: 220)
Name: NF6290_low_45
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3527740 - 3527944
Alignment:
| Q |
1 |
catgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccag |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527740 |
catgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccag |
3527839 |
T |
|
| Q |
101 |
aaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
3527840 |
aaacaaatacaagaacattgggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaactgcttatgttttgacttggacctcttag |
3527939 |
T |
|
| Q |
201 |
ttcat |
205 |
Q |
| |
|
||||| |
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|
| T |
3527940 |
ttcat |
3527944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3532167 - 3532371
Alignment:
| Q |
1 |
catgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3532167 |
catgcataggaatgtacctcgtacaccaatttgtctcctatgcttgtgtttagaggatttgttttcaagaagcttaaatcagtgtcatagttaaagccag |
3532266 |
T |
|
| Q |
101 |
aaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttag |
200 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| || ||||||||||| |||||||||||| |
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| T |
3532267 |
aaacaaatactagaacatttggattttctttgtgaactgttgttgctccttggctcatgtacttctgccaattgtctatgttttgacctggacctcttag |
3532366 |
T |
|
| Q |
201 |
ttcat |
205 |
Q |
| |
|
||||| |
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|
| T |
3532367 |
ttcat |
3532371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3549452 - 3549656
Alignment:
| Q |
1 |
catgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccag |
100 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||| | | |||||||| ||||| |||||||||||||||||| ||||||| || ||||||| |
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| T |
3549452 |
catgcataggaatgtacttcatacaccaatttgtctcctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccag |
3549551 |
T |
|
| Q |
101 |
aaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttag |
200 |
Q |
| |
|
||||||| || |||||||| |||||| ||||||| || |||||| ||||||||||||||||||| | |||| || ||||||||| |||||||| ||| |
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|
| T |
3549552 |
aaacaaaaactagaacatttggatttgctttgtggactgttgttactccttggctcatgtatttgtaccaattgtcattgttttgacctggacctcgtag |
3549651 |
T |
|
| Q |
201 |
ttcat |
205 |
Q |
| |
|
||||| |
|
|
| T |
3549652 |
ttcat |
3549656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 3555039 - 3555243
Alignment:
| Q |
1 |
catgcataggaatgtacctcgtacactaatttgtctcctatgcttatgtttagaggatttgttttcaagaagcttaaatcaatgtcatagttaaagccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||| | | |||||||| ||||| |||||||||||||||||| ||||||| || ||||||| |
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|
| T |
3555039 |
catgcataggaatgtacctcgtacaccaatttgttccctatgttaacatttagaggctttgtcttcaagaagcttaaatcagtgtcataatttaagccag |
3555138 |
T |
|
| Q |
101 |
aaacaaatacaagaacattgggattttctttgtgaaccgttgttgctccttggctcatgtatttttgccaactgcttatgttttgacttggacctcttag |
200 |
Q |
| |
|
||||||| || ||||||| |||||| |||| ||||| ||||| ||||||||||||||||| || |||||| || || |||||| ||||||||||||| |
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|
| T |
3555139 |
aaacaaagactagaacatctggatttgctttatgaacagttgtagctccttggctcatgtacttgtgccaattgttttcgttttgttttggacctcttag |
3555238 |
T |
|
| Q |
201 |
ttcat |
205 |
Q |
| |
|
||||| |
|
|
| T |
3555239 |
ttcat |
3555243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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