View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_47 (Length: 207)
Name: NF6290_low_47
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 3685958 - 3686135
Alignment:
| Q |
11 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
110 |
Q |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
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| Q |
111 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatag |
188 |
Q |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatag |
3686135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 3693725 - 3693899
Alignment:
| Q |
12 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
110 |
Q |
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| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
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| Q |
111 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaa |
185 |
Q |
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| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaa |
3693899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 3679213 - 3679378
Alignment:
| Q |
30 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
128 |
Q |
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| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
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| Q |
129 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatag |
188 |
Q |
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| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatag |
3679378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 3675532 - 3675699
Alignment:
| Q |
12 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
111 |
Q |
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| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
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| Q |
112 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagt |
189 |
Q |
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| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagt |
3675699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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