View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_5 (Length: 581)
Name: NF6290_low_5
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 71 - 577
Target Start/End: Original strand, 14257993 - 14258499
Alignment:
| Q |
71 |
agttatgctacgtactgctgcaatgataagagcagaaaaagcagcgaaaataacccatctatctttcgccacaaggttccacattttacccaaagcatac |
170 |
Q |
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| T |
14257993 |
agttatgctacatactgctgcaatgataagagcagaaaaagcagcgaaaataacccatctatctttcgccacaaggttccacattttacccaaagcatac |
14258092 |
T |
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| Q |
171 |
caaacggtaacgggttgattgaacatggaaacctcgacatcatcggagaagttccaccatgttcctccagggaaaatagaaggaaggaaagaaaccaatt |
270 |
Q |
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| T |
14258093 |
caaacggtaacgggttgattgaacatggaaacctcgacatcatcggagaagttccaccatgttcctccagggaaaatagaaggaaggaaagaaaccaatt |
14258192 |
T |
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| Q |
271 |
tgcgtattctgtcaagaaactcgttagaagcattggaagctgattctgaattgttgtggattgaaacttcattgatggaagatgattttattgaagagga |
370 |
Q |
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| T |
14258193 |
tgcgtattctgtcaagaaactcgtcagaagcattggaagctgattctgaattgttgtggattgaaacttcattgatggaagatgattttattgaagagga |
14258292 |
T |
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| Q |
371 |
taagagaatgcgtttggaagaagagagggtgaaatggtggcggttgacggaggagaatgtgattagaggttggtggcagtggcggtgacggtggtgatgg |
470 |
Q |
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| T |
14258293 |
taagagaatgcgtttggaagaagagagggtgaaatggtggcggttgacggaggagaatgtgataagaggttggtggcagtggcggtgacggtggtgatgg |
14258392 |
T |
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| Q |
471 |
cggttgtgagaggttgaaggaggaagtaagtaatgatagtgatgtgtgtttgtgagtagtggaggcatggtggtggtggcgaagtaacgaagaagatgat |
570 |
Q |
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| T |
14258393 |
cggttgtgagaggttgaaggaggaagtaagtaatgatagtgatgtgtgtttgtgagtagtggaggcatggtggttgtggcgaagtaacgaagaagatgat |
14258492 |
T |
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| Q |
571 |
gatgatg |
577 |
Q |
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| T |
14258493 |
gatgatg |
14258499 |
T |
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