View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6290_low_7 (Length: 461)

Name: NF6290_low_7
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6290_low_7
NF6290_low_7
[»] chr2 (4 HSPs)
chr2 (1-451)||(26611373-26611823)
chr2 (122-190)||(2126852-2126920)
chr2 (202-241)||(9943399-9943438)
chr2 (246-304)||(13238839-13238899)
[»] chr1 (3 HSPs)
chr1 (123-190)||(14128888-14128955)
chr1 (148-181)||(5125490-5125523)
chr1 (123-183)||(7034719-7034780)
[»] chr4 (4 HSPs)
chr4 (132-190)||(35728849-35728907)
chr4 (150-209)||(30592988-30593047)
chr4 (113-186)||(6269955-6270027)
chr4 (119-188)||(52063175-52063244)
[»] chr8 (1 HSPs)
chr8 (122-180)||(5400258-5400316)
[»] chr7 (2 HSPs)
chr7 (338-388)||(36021255-36021305)
chr7 (259-385)||(40561663-40561791)
[»] chr6 (1 HSPs)
chr6 (118-215)||(1349215-1349312)
[»] chr3 (1 HSPs)
chr3 (152-213)||(5046374-5046435)


Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 26611823 - 26611373
Alignment:
Q  1 aattggatctctgtacctagggatattagtcttactttcagataaaggatgctcacagtaaccaaaataatgtatacaggtttgtgcttcaaacgatagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611823 aattggatctctgtacctagggatattagtcttactttcagataaaggatgctcacagtaaccaaaataatgtatacaggtttgtgcttcaaacgatagt 26611724  T
Q  101 caaaagtgattcaaatatgtgcatgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgtttctggttctcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611723 caaaagtgattcaaatatgtgcatgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgtttctggttctcg 26611624  T
Q  201 attagaattgattctagctagaaactaggatttgtagcttttccgcaaacataaattttacactcaaatctatttttcaactcactcacatcaacatatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611623 attagaattgattctagctagaaactaggatttgtagcttttccgcaaacataaattttacactcaaatctatttttcaactcactcacatcaacatatc 26611524  T
Q  301 caaatgtaaatcattttattgtaaactcgcatttaactaaaatcaattcagtcataatcaatttatgtcacggtagaaccaaacacacatagtctatatt 400  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611523 caattgtaaatcattttattgtaaactcgcttttaactaaaatcaattcagtcataatcaatttatgtcacggtagaaccaaacacacatagtctatatt 26611424  T
Q  401 aaatatgacaactaattttgtattttgatctgtactgttatatgatgatgt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26611423 aaatatgacaactaattttgtattttgatctgtactgttatatgatgatgt 26611373  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 2126852 - 2126920
Alignment:
Q  122 catgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgttt 190  Q
    ||||||||| ||||||||| |||  ||||||| ||||| ||||||||||||||| ||||| ||||||||    
T  2126852 catgtttggattcacttttgggagcgtcaaaaatgattatgaagacttaaaattaattttagtatgttt 2126920  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 9943399 - 9943438
Alignment:
Q  202 ttagaattgattctagctagaaactaggatttgtagcttt 241  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  9943399 ttagaattgattctagcttgaagctaggatttgtagcttt 9943438  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 13238839 - 13238899
Alignment:
Q  246 caaacataaattttacactcaaatctatttttcaactcac--tcacatcaacatatccaaa 304  Q
    |||||||  ||||||||||||||| |||||||||||||||  |||||| ||| ||||||||    
T  13238839 caaacatggattttacactcaaatttatttttcaactcactttcacatgaacttatccaaa 13238899  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 14128955 - 14128888
Alignment:
Q  123 atgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgttt 190  Q
    |||||||| ||||||||| ||| | |||||||||||| |||| |||||| ||||||||| ||||||||    
T  14128955 atgtttggattcacttttgggagattcaaaagtgattatgaaaacttaacattgattttagtatgttt 14128888  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 5125490 - 5125523
Alignment:
Q  148 tcaaaagtgattttgaagacttaaaattgatttt 181  Q
    |||||||||||| |||||||||||||||||||||    
T  5125490 tcaaaagtgattctgaagacttaaaattgatttt 5125523  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 7034780 - 7034719
Alignment:
Q  123 atgtttggtttcactttttggatagtcaaaagtgattttgaagactt-aaaattgatttttg 183  Q
    |||||||| |||| |||| ||| || | ||||||||||||||||||| ||||||||||||||    
T  7034780 atgtttggattcagttttgggagaggcgaaagtgattttgaagacttaaaaattgatttttg 7034719  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 35728849 - 35728907
Alignment:
Q  132 ttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgttt 190  Q
    ||||||||| | | ||||||||||||||||||||| |||||||||||||| | ||||||    
T  35728849 ttcacttttggaagagtcaaaagtgattttgaagaattaaaattgattttggcatgttt 35728907  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 30592988 - 30593047
Alignment:
Q  150 aaaagtgattttgaagacttaaaattgatttttgtatgtttctggttctcgattagaatt 209  Q
    ||||||||||||||||||||||||||| |||  |||||||   |||| ||||||||||||    
T  30592988 aaaagtgattttgaagacttaaaattgctttcggtatgttgggggttttcgattagaatt 30593047  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 6269955 - 6270027
Alignment:
Q  113 aaatatgtgcatgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtat 186  Q
    ||||| ||| |||||||| |||| |||| |||||| ||||||||||| |||| ||||||||| |||||| ||||    
T  6269955 aaataagtgtatgtttggattca-ttttaggataggcaaaagtgattatgaaaacttaaaatagattttagtat 6270027  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 52063244 - 52063175
Alignment:
Q  119 gtgcatgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgatttttgtatgt 188  Q
    |||||||||  |||||| ||||  || |||||||||||||| | |||||||| |||||||||| ||||||    
T  52063244 gtgcatgttgagtttcaattttgtgagagtcaaaagtgattctaaagacttacaattgattttggtatgt 52063175  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 5400258 - 5400316
Alignment:
Q  122 catgtttggtttcactttttggatagtcaaaagtgattttgaagacttaaaattgattt 180  Q
    ||||||| | ||||||||||||| ||||||||||| || | ||| ||||||||||||||    
T  5400258 catgtttagattcactttttggagagtcaaaagtgtttctaaaggcttaaaattgattt 5400316  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Complemental strand, 36021305 - 36021255
Alignment:
Q  338 taaaatcaattcagtcataatcaatttatgtcacggtagaaccaaacacac 388  Q
    ||||||||||| ||||| ||||||||| ||||||  |||||||||||||||    
T  36021305 taaaatcaatttagtcaaaatcaatttttgtcaccctagaaccaaacacac 36021255  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 385
Target Start/End: Complemental strand, 40561791 - 40561663
Alignment:
Q  259 tacactcaaatctatttttcaactcactc--acatcaacatatccaaatgtaaatcattttattgtaaactcgcatttaactaaaatcaattcagtcata 356  Q
    ||||||||||| |||| |||||||||||   |||| ||  ||||||||  ||||||| |||| | | |||||   ||| |||| |||||||||| ||| |    
T  40561791 tacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttactagaatcaattcactcaaa 40561692  T
Q  357 atcaatttatgtcacggtagaaccaaaca 385  Q
    ||||| || ||||| ||||||||||||||    
T  40561691 atcaacttttgtcatggtagaaccaaaca 40561663  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 215
Target Start/End: Complemental strand, 1349312 - 1349215
Alignment:
Q  118 tgtgcatgtttggtttcactttttggat-agtcaaaagtgattttgaagacttaaaattgatttttgtatgtttctggttctcgattagaattgattct 215  Q
    |||||||| |||||||||||| | |||| || ||||||||||| | |||||||||||||||| || ||||||||    ||||| | |||||||||||||    
T  1349312 tgtgcatgcttggtttcacttct-ggatgagacaaaagtgattctaaagacttaaaattgatattggtatgtttggcattctcaactagaattgattct 1349215  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 5046435 - 5046374
Alignment:
Q  152 aagtgattttgaagacttaaaattgatttttgtatgtttctggttctcgattagaattgatt 213  Q
    |||||||| ||||||||| |||||||||||  |||||||  | ||||| |||||||||||||    
T  5046435 aagtgattctgaagacttgaaattgattttaatatgtttgggattctcaattagaattgatt 5046374  T

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