View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_8 (Length: 461)
Name: NF6290_low_8
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 110 - 453
Target Start/End: Original strand, 34765170 - 34765513
Alignment:
| Q |
110 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
209 |
Q |
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| T |
34765170 |
taaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgttcaaggtttgatgcattgaaagagt |
34765269 |
T |
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| Q |
210 |
gagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaact |
309 |
Q |
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| T |
34765270 |
gagaggatcaagtgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacatgtgaattcatttgagctcaaatacaaact |
34765369 |
T |
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| Q |
310 |
tattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtaca |
409 |
Q |
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| T |
34765370 |
tattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagttagcttctgaaaatttggtaca |
34765469 |
T |
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| Q |
410 |
gattttcaaattgaacctattaataatattattgttgagaataa |
453 |
Q |
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| T |
34765470 |
gattttcaaattgaacctattaataatattattgttgagaataa |
34765513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 280
Target Start/End: Complemental strand, 6440662 - 6440469
Alignment:
| Q |
86 |
aagccaaacaaaaacatacaatagtaaagtgacctgcctctaatagccaattccaaaccaaaaatcaaatatcttcaaagtacatattaacaacaatgtt |
185 |
Q |
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| T |
6440662 |
aagccaaacaaatacaaactatagaaaattaacctacttctaaaacccaattccaaaccaaaaatcaaatatcttcgaagggcacatta-caatagtgtt |
6440564 |
T |
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| Q |
186 |
caaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtggttacggataataattttcacat |
280 |
Q |
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| T |
6440563 |
caatacttgctacattgaaggagtgagacgaccaaatgttggaacgaggaatgtgacaatgaactcattgtggttaacgataatgaatttcacat |
6440469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 453
Target Start/End: Original strand, 44015301 - 44015464
Alignment:
| Q |
289 |
atttgagctcaaatacaaacttattgtaaagcttgttgcatgaccaaactcttgaggcatgcaactggataagctgttatagctcaaatccaaaaaagtt |
388 |
Q |
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| T |
44015301 |
atttgagctcaaatccaaactgattgttaggcttgtaacatgaccaatctctggaggtatgctaccagataagctattataactcaaatccaaaagagtt |
44015400 |
T |
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| Q |
389 |
agcttctgaaaatttggtacagattttcaaattgaacctattaataatattattgttgagaataa |
453 |
Q |
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| T |
44015401 |
agcttctgtagatttctaacagattttggtattgagcctgttaataa-attattgttgagaataa |
44015464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 895426 - 895501
Alignment:
| Q |
182 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
257 |
Q |
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| T |
895426 |
tgttcaagacttgttgcattgaaggagtaagaggagaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
895501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 905214 - 905139
Alignment:
| Q |
182 |
tgttcaaggtttgatgcattgaaagagtgagaggatcaagcgttggaacgaggaatgtgacaatgaactcattgtg |
257 |
Q |
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|||||||| ||| ||||||||| |||| |||||| ||| ||||||| || ||||||||||||||| |||||||| |
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| T |
905214 |
tgttcaagacttgttgcattgaaggagtaagaggacaaagtgttggaatgatgaatgtgacaatgaattcattgtg |
905139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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