View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6290_low_9 (Length: 451)
Name: NF6290_low_9
Description: NF6290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6290_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 431
Target Start/End: Original strand, 25792845 - 25793265
Alignment:
| Q |
11 |
cacagagctaaagggacaaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacagagctagttccattgcttaaaca |
110 |
Q |
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| T |
25792845 |
cacagagctaaagggacaaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacaaagctaattccattgcttaaaca |
25792944 |
T |
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| Q |
111 |
aaaggaatagaggaaaagcaaaaatcagcataataatagattagtgtaaaccataatgaaaagctccaaaactataatgtgtgagacagtgatcaaatca |
210 |
Q |
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| T |
25792945 |
aaaggaatagaggaaaagcaaaaatcagcataataatagattagtgtaaaccataatgaaaagctccaaaactataatgtgtgagacagtgatcaaatca |
25793044 |
T |
|
| Q |
211 |
gcaaacaaactcaccatgtaatgcatcccctttttccacatgctcaaattctgagggcacattcttgatagggtgaagtacaactcttccaccacgaacg |
310 |
Q |
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| T |
25793045 |
gtaaacaaactcaccatgtaatgcatcccctttttccacatgctcaaattctgagggcacattcttgatggggtgaagtacaactcttccaccacgaacg |
25793144 |
T |
|
| Q |
311 |
ttctaaacaagttcataagagctagttatatcaataagacagtcattataagaaaactttagaaaagttacgtcgagtcatgtttggataaaaaactttc |
410 |
Q |
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| T |
25793145 |
ttctaaacaagttcataagagctagataaattaacaagacagttattataagaaaactttagaaaagttactcggagtcatgtttgaataaaaaactttc |
25793244 |
T |
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| Q |
411 |
atataaactattttcataaac |
431 |
Q |
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| T |
25793245 |
atataaacgattttcataaac |
25793265 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 4112601 - 4112529
Alignment:
| Q |
28 |
aaagaggcattacactatgcacattcagaagtttttcatttgttaacttctccaaagacagagctagttccat |
100 |
Q |
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|||||||||||||||| || |||||||||||||| |||||| ||||||||||||||||||||| | |||||| |
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| T |
4112601 |
aaagaggcattacactgtgaacattcagaagtttctcatttactaacttctccaaagacagagccaattccat |
4112529 |
T |
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