View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6291_high_24 (Length: 221)
Name: NF6291_high_24
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2329783 - 2329988
Alignment:
| Q |
1 |
cccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329783 |
cccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaa |
2329882 |
T |
|
| Q |
101 |
catggtcctatcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2329883 |
catggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtct |
2329982 |
T |
|
| Q |
201 |
tctctg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
2329983 |
tctctg |
2329988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 2326078 - 2326256
Alignment:
| Q |
11 |
ccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtccta |
110 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
2326078 |
ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta |
2326177 |
T |
|
| Q |
111 |
tcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaa |
189 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2326178 |
tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa |
2326256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 2292919 - 2293099
Alignment:
| Q |
26 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
125 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
2292919 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2293018 |
T |
|
| Q |
126 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
206 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
2293019 |
tcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatcttctctg |
2293099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 2320239 - 2320405
Alignment:
| Q |
26 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
125 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
2320239 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata |
2320338 |
T |
|
| Q |
126 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
192 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2320339 |
tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2320405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 2309250 - 2309416
Alignment:
| Q |
26 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
125 |
Q |
| |
|
|||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
2309250 |
atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccata |
2309349 |
T |
|
| Q |
126 |
tcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
192 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||| ||||| | ||||||||||||||| |
|
|
| T |
2309350 |
tcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactc |
2309416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 2302517 - 2302704
Alignment:
| Q |
5 |
cctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatg |
104 |
Q |
| |
|
||||| || ||||| || || ||| |||||| ||| || | ||| |||||| ||| | |||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
2302517 |
cctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatg |
2302616 |
T |
|
| Q |
105 |
gtcctatcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactc |
192 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
2302617 |
gtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactc |
2302704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 2350090 - 2350288
Alignment:
| Q |
8 |
ggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtc |
107 |
Q |
| |
|
|||||||| ||||| || || |||||||| |||| |||||| |||||||||| |||| || ||||||||| ||| ||| || || ||||| |||||| |
|
|
| T |
2350090 |
ggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtc |
2350189 |
T |
|
| Q |
108 |
ctatcatcaatcttaatatcggttctcgaccttccattttcatctccgaccgtgctctggcccaccacgctctcgttcaaaactcctccgtcttctctg |
206 |
Q |
| |
|
||||||||| ||| || ||| ||| ||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
2350190 |
ctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatcttctctg |
2350288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University