View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_high_9 (Length: 347)
Name: NF6291_high_9
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 76 - 331
Target Start/End: Original strand, 37614639 - 37614896
Alignment:
| Q |
76 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccnnnnnnnta-ttcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
174 |
Q |
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| T |
37614639 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccaacaaaaaaattcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
37614738 |
T |
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| Q |
175 |
gaactcactttgtgttttgagtaggaggcttacaactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaa-atgtg |
273 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37614739 |
gaactcactttgtgttttgagtaggaggcttacgactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaatatgtg |
37614838 |
T |
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| Q |
274 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37614839 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgt |
37614896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37614421 - 37614501
Alignment:
| Q |
1 |
atccttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
81 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37614421 |
atccttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
37614501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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