View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_1 (Length: 1198)
Name: NF6291_low_1
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 1039; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1039; E-Value: 0
Query Start/End: Original strand, 12 - 1181
Target Start/End: Original strand, 38889287 - 38890451
Alignment:
| Q |
12 |
tcatcaaggaaaatattggtttgttcgaaatctgttatgctacgatgctatagccccactatagccaccatttgagaacactttatttatactaaattct |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38889287 |
tcatcaaggaaaatattggtttgttcgaaatctgttatgctacgatgctatagccccactatagccaccatttgagaacactttatttataccaaattct |
38889386 |
T |
|
| Q |
112 |
gctaccctgtaacactatacatcactgattgactaccaaactgctggaaaattctcttcacctctacttattagaatgaaaacaaggacagagctaagct |
211 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38889387 |
gctaccctgaaacactatacataactgattgactaccacactgctggacaattctcttcacctctacttattagaatgaaaacaaggacggagctaagct |
38889486 |
T |
|
| Q |
212 |
tcatcataagatccatatgaagaaaaaagaggggtacaatgcaggcaatcatgaacaaacaaacactgaaacagaaaaaatggtaagtttactactgtgt |
311 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38889487 |
tcatcataagatccatatgaagaaaaaagagaggtacaatgcagggaatcatgaacaaacaaacactgaaacagaaaaaatggtaagtttactactgtgt |
38889586 |
T |
|
| Q |
312 |
aaaaaattactaagttaacagtagggagagtacatgactggttgtgtgttttagctgtaagggggtatatattaggatgcagggtactagaacttgttgg |
411 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38889587 |
aaaaaactactaagttaacagtagggagagtacatgactggt-gtgtgttttagctgtaagggggtatatattaggatgcagggtactagaacttgttgg |
38889685 |
T |
|
| Q |
412 |
gacttcaggaagagatcggagaacctcaaacgttcaagggcaattaacttttatggttttttacatttcgttcctcagaatttgttatcatcttggtaca |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38889686 |
gacttcaggaagagatcggagaacctcaaacattcaagggcgattagcttttatggttttttacatttcgttcctcagaatttgttatcatcttggtaca |
38889785 |
T |
|
| Q |
512 |
ggtcttcttagttcagtcttaatacaacgatttttcctttttctctcttgtatattttggtaccttataacttaccaaatcaaaagcacaattcacatct |
611 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
38889786 |
ggtcttcttagttcagtcttaatacaacgatttttcctttt---ctctcgtatattttggtacct-ataacttaccaaatcaaaagcacaattcacatct |
38889881 |
T |
|
| Q |
612 |
atgataatcatatgatttatcaaaagatcaatccagccacaacatgcaatttgtgttgtgaaatataccacccatgttcctctgttccaaaagttactat |
711 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
38889882 |
atgatagtcatatgatttatcaaaagatcaatccagccacaacatgcaatttgtgttgtgaaatatatcacccgtgttcctctgttccaaaagttactat |
38889981 |
T |
|
| Q |
712 |
cctgtataaaacctaacaagtttctcctaataatgtaacaacgaacaaactagctataagtttaactaacagtttgtataccagaaacaaaataactaac |
811 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38889982 |
cctgtataaaacctaacaagtttctcctaataatgtaacaacgaacaaactagctataagtttgactaacagtttgtataccagaaacaaaataactaac |
38890081 |
T |
|
| Q |
812 |
atcnnnnnnnaaaatgaactcatatatctactccaaaatagaagatgttataaatcacttgattattcaaatcattaccaatgttattaaatagagacta |
911 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38890082 |
atctttttttaaaatgaactcatatatctactccaaaatagaagatgttataaatcacttgattattcaaatcattaccaatgttattaaatagagacta |
38890181 |
T |
|
| Q |
912 |
taacttatcaagatttgaacaaataactatcattccaagatacactatttagtacaaaatgatgtaaaacagcagctacatcggcactatagcactgctg |
1011 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38890182 |
taacttagcaagatttgaacaaataactatcattccaagatacactatttagtacaaaatgatgtaaaacagcagctacatcggcactatagcactgctg |
38890281 |
T |
|
| Q |
1012 |
catagcaaattttgtacaaactgttaaaccctaaaccctattttccacgatccacaatcgacaacattggtcattacaaagcattaacagcaaaacaaaa |
1111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38890282 |
catagcaaattttgtacaaaccgttaaaccctaaaccctattttccacgatccacaatcgacaacattggtcattacaaagcattaacagcaaaacaaaa |
38890381 |
T |
|
| Q |
1112 |
acatatcaacacaaaatttgctgcaatgtaacgcgaatttcacaatcgagcacttaaaaccttaccaatc |
1181 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38890382 |
acatatcaacacaaaatttgctgcaatgtaatgcgaatttcacaatcgagcacttaaaaccttaccaatc |
38890451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 923 - 984
Target Start/End: Original strand, 3133472 - 3133533
Alignment:
| Q |
923 |
gatttgaacaaataactatcattccaagatacactatttagtacaaaatgatgtaaaacagc |
984 |
Q |
| |
|
|||||||||||||| |||| || | ||||||||||||||||||||||||||| ||||||| |
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|
| T |
3133472 |
gatttgaacaaatagctattgttacgtgatacactatttagtacaaaatgatgtgaaacagc |
3133533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 951 - 991
Target Start/End: Complemental strand, 4354376 - 4354336
Alignment:
| Q |
951 |
atacactatttagtacaaaatgatgtaaaacagcagctaca |
991 |
Q |
| |
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|||||||||||||||||||||| ||||||| |||||||||| |
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| T |
4354376 |
atacactatttagtacaaaatgttgtaaaatagcagctaca |
4354336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 908 - 971
Target Start/End: Complemental strand, 46404689 - 46404626
Alignment:
| Q |
908 |
actataacttatcaagatttgaacaaataactatcattccaagatacactatttagtacaaaat |
971 |
Q |
| |
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|||||||| ||||| ||||||||||||| |||| ||||| |||||||||||||||| ||||| |
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|
| T |
46404689 |
actataacctatcagaatttgaacaaatatctattgttccacgatacactatttagtataaaat |
46404626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 950 - 1008
Target Start/End: Original strand, 4787939 - 4787997
Alignment:
| Q |
950 |
gatacactatttagtacaaaatgatgtaaaacagcagctacatcggcactatagcactg |
1008 |
Q |
| |
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||||||||||||||||||||||| ||| ||| || |||||| ||||||||||||||| |
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| T |
4787939 |
gatacactatttagtacaaaatgttgtcaaatagtggctacacaggcactatagcactg |
4787997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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