View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_12 (Length: 338)
Name: NF6291_low_12
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 47745466 - 47745769
Alignment:
| Q |
20 |
agaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctc |
119 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||| ||||||||||||||||||| |
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| T |
47745466 |
agaaggaatatatttcatatctaatattacaacttagtttgagaactctaccaccaatcttgttataaaaaaaacttggagtttctgaaatagcacgctc |
47745565 |
T |
|
| Q |
120 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745566 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
47745665 |
T |
|
| Q |
220 |
cgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacatttctattgttcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47745666 |
cgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgagccacatcggttacatttctattgttcc |
47745765 |
T |
|
| Q |
320 |
actt |
323 |
Q |
| |
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|||| |
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|
| T |
47745766 |
actt |
47745769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 47717677 - 47717966
Alignment:
| Q |
20 |
agaaggaatatatttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctc |
119 |
Q |
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|||||||||| ||||||| ||||||||| |||||| ||||||||||| || | |||| ||| ||||| | ||||||||||||||||||||||| |
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| T |
47717677 |
agaaggaatagatttcatgtctaatattgcaacttggtttgagaactataccgccaaccttgttattaaaataaataggaatttctgaaatagcacgctc |
47717776 |
T |
|
| Q |
120 |
taaacaatcattgcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaaagttgcattagcggtagcaaactta |
219 |
Q |
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||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47717777 |
taaacaatcattgcaatcttgctgtgataaatcaggtgtacactgcacaagaccatatgtggtttcaaaattcaaagttgcattagcggtagcaaactta |
47717876 |
T |
|
| Q |
220 |
cgacgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacattt |
309 |
Q |
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||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
47717877 |
cgacgagaatcacttgatgctgctatttctttgagtttcctcatcaagttcccaagaacttgattaaattgatccacctcggttgcattt |
47717966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 32 - 308
Target Start/End: Original strand, 47759801 - 47760086
Alignment:
| Q |
32 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcatt |
131 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| ||||||| |||||||||| ||| |
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| T |
47759801 |
tttcatatctgatattacaacttggtttgagaactctaccaccaatcttgttattacaacaacttggaatatctgagatagcaccatctaaacaattatt |
47759900 |
T |
|
| Q |
132 |
gcaatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacga |
222 |
Q |
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||||||||| ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| | |||||||| |||||| |
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| T |
47759901 |
gcaatcttgctctgacaaatcaggtgtgcactgaacaagaccatatatggtttgaaaattcaaatttacatcagttgcattatctgtagcaaatttacga |
47760000 |
T |
|
| Q |
223 |
cgagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacatt |
308 |
Q |
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|||||||||| |||||||||| | || || ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |
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| T |
47760001 |
cgagaatcacttgatgcagctttctctttcagtttcctcatcaagttcccaagaacttggttaaattgatccacctctgttacatt |
47760086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 33 - 308
Target Start/End: Original strand, 47712887 - 47713171
Alignment:
| Q |
33 |
ttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttattnnnnnnncttggaatttctgaaatagcacgctctaaacaatcattg |
132 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| ||||||||| |||| ||||||||||||| |||||| |||||||||||||||| |
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| T |
47712887 |
ttcatatctaatattacaacttggtttgacaactctacaaccaatcttgttataacagtaaattggaatttctgatatagcaaactctaaacaatcattg |
47712986 |
T |
|
| Q |
133 |
caatcttgtcctgacaagtcaggtgtacactgcacaagaccatatatggtttcaaaattcaa---------agttgcattagcggtagcaaacttacgac |
223 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | |||||||||| ||| |
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| T |
47712987 |
caatcttgctctgacaaatcaggtgtacactgcacaagaccatatatggtttgaaaattcaaattcacatcagttgcattatccgcagcaaacttaagac |
47713086 |
T |
|
| Q |
224 |
gagaatcacctgatgcagctatttcattgagtttcctcatcaagttcccaagaacttgattaaattgatccacatcggttacatt |
308 |
Q |
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||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||| |
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| T |
47713087 |
gagaatcacttgatgcagctatttctctcagtttcctcatcaagtttccaagaactcgattaaatggatccacctcggttacatt |
47713171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 47782277 - 47782236
Alignment:
| Q |
145 |
gacaagtcaggtgtacactgcacaagaccatatatggtttca |
186 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| |
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| T |
47782277 |
gacaagtcaggtgtacactgaacaagaccatatattgtttca |
47782236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 47704888 - 47704942
Alignment:
| Q |
32 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatcttcttatt |
86 |
Q |
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|||||||||||||||| |||||| |||||| |||||| |||||||||| ||||| |
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| T |
47704888 |
tttcatatctaatattgcaacttggtttgataactcttccaccaatcttgttatt |
47704942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 28830930 - 28830976
Alignment:
| Q |
32 |
tttcatatctaatattacaacttcgtttgagaactctagcaccaatc |
78 |
Q |
| |
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||||||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
28830930 |
tttcatatctaatattacaacttggtttcataactctagcaccaatc |
28830976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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