View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6291_low_14 (Length: 312)

Name: NF6291_low_14
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6291_low_14
NF6291_low_14
[»] chr3 (1 HSPs)
chr3 (4-301)||(30797245-30797536)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 301
Target Start/End: Complemental strand, 30797536 - 30797245
Alignment:
Q  4 tgtatagacactgatatcagacacaacactgacacacatatacatagtgatagtagtaattcaagaaaatgtaaatgattgaacccaactacatgcgtgt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  30797536 tgtatagacactgatatcagacacaacactgacacacatatacatagt------agtaattcaagaaaatgtaaatgattgaacccaactacatgcgtgt 30797443  T
Q  104 atcatgtcagacatcagacacacctttctaatgttgaatgccggtactaacaatgtgcaaaaattaatcgagcattacttacataaatgtgaagtttacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30797442 atcatgtcagacatcagacacacctttctaatgttgaatgccggtactaacaatgtgcaaaaattaatcgagcatgacttacataaatgtgaagtttacc 30797343  T
Q  204 attgaagattgaggcaacttcttgaatgagcttctccctttgttctcgagatgagacatcacacacagatccagacaccaaaaagcctttactacgcc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30797342 attgaagattgaggcaacttcttgaatgagcttctccctttgttctcgagatgagacatcacacacagatccagacaccaaaaagcctttactacgcc 30797245  T

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