View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_15 (Length: 311)
Name: NF6291_low_15
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 12803493 - 12803346
Alignment:
| Q |
10 |
agatgaatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgc |
109 |
Q |
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| T |
12803493 |
agatgaatgataatattatgttggtaggtgatggaagtagaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgc |
12803394 |
T |
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| Q |
110 |
cactgcaggtaaattcatggctatttttcttatggaatcaaattcaac |
157 |
Q |
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| T |
12803393 |
cactgcaggtaaattcatggctatttttcttatggaatcaaattcaac |
12803346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 18785291 - 18785182
Alignment:
| Q |
15 |
aatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgccactg |
114 |
Q |
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| T |
18785291 |
aatgataacattatgttggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
18785192 |
T |
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| Q |
115 |
caggtaaatt |
124 |
Q |
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| T |
18785191 |
caggtgaatt |
18785182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 10820039 - 10820133
Alignment:
| Q |
15 |
aatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgc |
109 |
Q |
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| T |
10820039 |
aatgataacattatgttggtcggtgatggaatgcaaaataccatcataacaagttctagaagtgttcaaggtggttttaccacttatagctctgc |
10820133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 1607244 - 1607135
Alignment:
| Q |
15 |
aatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgccactg |
114 |
Q |
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| T |
1607244 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
1607145 |
T |
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| Q |
115 |
caggtaaatt |
124 |
Q |
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| T |
1607144 |
caggtgaatt |
1607135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 1624265 - 1624156
Alignment:
| Q |
15 |
aatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgccactg |
114 |
Q |
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| T |
1624265 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttttaccacttatagctctgcaacag |
1624166 |
T |
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| Q |
115 |
caggtaaatt |
124 |
Q |
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| T |
1624165 |
caggtgaatt |
1624156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 1630240 - 1630136
Alignment:
| Q |
15 |
aatgataatattatgttggttggtgatggaagtaaaaatacagtgataacaagtaatagaaatgttcaagctggttttactacctatagctctgccactg |
114 |
Q |
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| T |
1630240 |
aatgacaatattatgctggttggtgatgggatgcaaaataccataataacaagttctagaagtgttcaaggtggttataccacttatagctctgcaacag |
1630141 |
T |
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| Q |
115 |
caggt |
119 |
Q |
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| T |
1630140 |
caggt |
1630136 |
T |
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