View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_21 (Length: 240)
Name: NF6291_low_21
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35163429 - 35163510
Alignment:
| Q |
1 |
ttttctcatcccacctcactctacacttgccaattcaagacacaacagcaccaagagtgttgaattacaaaagagagaggga |
82 |
Q |
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| T |
35163429 |
ttttctcatcccacctcactctacacttgccaattcaagacacaacaacaccaagagtgttgaattacaaaagagagaggga |
35163510 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 35163584 - 35163657
Alignment:
| Q |
150 |
tgccttcttcatctccaaccttggtctcaaaatgtaccataaccccagaccaaaaatccaacatagcaaacctt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35163584 |
tgccttcttcatctccaaccttggtctcaaaatgtaccataaccccagaccaaaaatccaacatagcaaacctt |
35163657 |
T |
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